Variant report

Variant	rs72930914
Chromosome Location	chr11:65760584-65760585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65684400..65687504-chr11:65755771..65760818,5	MCF-7	breast:
2	chr11:65758856..65761840-chr11:65835793..65837474,2	MCF-7	breast:
3	chr11:65759662..65761884-chr11:65763291..65764975,2	MCF-7	breast:
4	chr11:65754920..65762066-chr11:65768032..65772490,9	K562	blood:
5	chr11:65759257..65761081-chr11:65768976..65770919,2	MCF-7	breast:
6	chr11:65755754..65758071-chr11:65759625..65762366,2	K562	blood:
7	chr11:65758864..65760871-chr11:65762649..65765214,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175376	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000255038	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11545221	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12574568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575004	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12575514	0.91[ASN][1000 genomes]
rs12575735	0.93[ASN][1000 genomes]
rs12576095	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576287	0.99[ASN][1000 genomes]
rs12577165	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12577625	0.91[ASN][1000 genomes]
rs2276015	0.91[ASN][1000 genomes]
rs2276017	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277305	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28372938	0.91[ASN][1000 genomes]
rs3825068	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57968007	0.90[ASN][1000 genomes]
rs58905199	0.91[ASN][1000 genomes]
rs59156593	0.90[EUR][1000 genomes]
rs61515492	0.86[ASN][1000 genomes]
rs67232706	0.89[ASN][1000 genomes]
rs67530871	0.89[ASN][1000 genomes]
rs72928826	0.90[EUR][1000 genomes]
rs72928828	0.91[ASN][1000 genomes]
rs72928830	0.91[ASN][1000 genomes]
rs72928831	0.84[ASN][1000 genomes]
rs72928860	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72928879	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72928884	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72928892	0.85[EUR][1000 genomes]
rs72928895	0.85[EUR][1000 genomes]
rs72928898	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72928900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72930912	0.85[EUR][1000 genomes]
rs72930933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930958	0.85[EUR][1000 genomes]
rs72930964	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930967	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930974	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72930976	0.85[EUR][1000 genomes]
rs72930978	0.85[EUR][1000 genomes]
rs72930984	0.85[EUR][1000 genomes]
rs72930985	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9943575	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
7	nsv819658	chr11:65757756-65764902	Strong transcription Weak transcription Enhancers	TF binding region Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65730600-65767800	Weak transcription	Right Atrium	heart
2	chr11:65736400-65767400	Weak transcription	Psoas Muscle	Psoas
3	chr11:65741200-65765000	Weak transcription	NHDF-Ad	bronchial
4	chr11:65741400-65762000	Weak transcription	HSMMtube	muscle
5	chr11:65741600-65762000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:65743800-65764800	Weak transcription	HSMM	muscle
7	chr11:65745000-65764200	Weak transcription	HUVEC	blood vessel
8	chr11:65745200-65764800	Weak transcription	K562	blood
9	chr11:65745400-65764800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:65745400-65765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:65745600-65764200	Weak transcription	NH-A	brain
12	chr11:65745800-65764800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:65746000-65764600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:65746800-65765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:65747000-65764200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:65747000-65764600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:65747000-65764600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:65747000-65764600	Weak transcription	Ovary	ovary
19	chr11:65747000-65764800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:65747200-65764200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:65747200-65764200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:65747200-65764200	Weak transcription	Liver	Liver
23	chr11:65747200-65764200	Weak transcription	A549	lung
24	chr11:65747200-65764400	Weak transcription	Left Ventricle	heart
25	chr11:65747200-65764600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:65747200-65764600	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:65747200-65764800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:65747200-65764800	Weak transcription	Pancreas	Pancrea
29	chr11:65747200-65764800	Weak transcription	Small Intestine	intestine
30	chr11:65747400-65763000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:65747400-65763800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:65747400-65764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:65747400-65764200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:65747400-65764800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:65747400-65764800	Weak transcription	Fetal Lung	lung
36	chr11:65747400-65765200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:65747600-65764200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:65747600-65764600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:65747600-65764800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:65747600-65765000	Weak transcription	Colonic Mucosa	Colon
41	chr11:65747800-65762200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:65747800-65764000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:65747800-65764000	Weak transcription	Placenta	Placenta
44	chr11:65747800-65764200	Weak transcription	Gastric	stomach
45	chr11:65747800-65764200	Weak transcription	Right Ventricle	heart
46	chr11:65747800-65764200	Weak transcription	HMEC	breast
47	chr11:65747800-65764600	Weak transcription	Osteobl	bone
48	chr11:65747800-65764800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:65747800-65764800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:65747800-65764800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links