Variant report

Variant	rs12577625
Chromosome Location	chr11:65737899-65737900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65736999..65738996-chr11:65769148..65771256,2	MCF-7	breast:
2	chr11:65737683..65739505-chr11:65768253..65770235,2	MCF-7	breast:
3	chr11:65736026..65738088-chr11:65749459..65751223,2	MCF-7	breast:
4	chr11:65736088..65739502-chr11:65743802..65746702,3	MCF-7	breast:
5	chr11:65736718..65739308-chr11:66048682..66051569,2	K562	blood:
6	chr11:65737150..65739313-chr11:65741413..65743660,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175467	Chromatin interaction
ENSG00000174871	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000175376	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10791831	0.81[ASN][1000 genomes]
rs11542177	0.81[ASN][1000 genomes]
rs11545221	0.99[ASN][1000 genomes]
rs12099125	0.81[ASN][1000 genomes]
rs12099359	0.81[ASN][1000 genomes]
rs12574568	0.91[ASN][1000 genomes]
rs12575004	0.99[ASN][1000 genomes]
rs12575514	1.00[ASN][1000 genomes]
rs12575735	0.99[ASN][1000 genomes]
rs12576095	0.89[ASN][1000 genomes]
rs12576287	0.93[ASN][1000 genomes]
rs12576319	0.81[ASN][1000 genomes]
rs12577165	0.89[ASN][1000 genomes]
rs2276015	1.00[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2276017	0.91[ASN][1000 genomes]
rs2277305	0.91[ASN][1000 genomes]
rs28372938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3825068	0.91[ASN][1000 genomes]
rs57968007	0.99[ASN][1000 genomes]
rs58192075	0.81[ASN][1000 genomes]
rs58905199	1.00[ASN][1000 genomes]
rs61515492	0.94[ASN][1000 genomes]
rs653955	0.81[ASN][1000 genomes]
rs67232706	0.97[ASN][1000 genomes]
rs67530871	0.97[ASN][1000 genomes]
rs72928828	1.00[ASN][1000 genomes]
rs72928830	1.00[ASN][1000 genomes]
rs72928831	0.92[ASN][1000 genomes]
rs72928860	0.99[ASN][1000 genomes]
rs72928879	0.99[ASN][1000 genomes]
rs72928884	0.93[ASN][1000 genomes]
rs72928898	0.93[ASN][1000 genomes]
rs72928900	0.93[ASN][1000 genomes]
rs72930914	0.91[ASN][1000 genomes]
rs72930933	0.91[ASN][1000 genomes]
rs72930942	0.91[ASN][1000 genomes]
rs72930945	0.91[ASN][1000 genomes]
rs72930951	0.91[ASN][1000 genomes]
rs72930952	0.91[ASN][1000 genomes]
rs72930956	0.91[ASN][1000 genomes]
rs72930964	0.91[ASN][1000 genomes]
rs72930967	0.91[ASN][1000 genomes]
rs72930974	0.91[ASN][1000 genomes]
rs72930985	0.83[ASN][1000 genomes]
rs73496412	0.81[ASN][1000 genomes]
rs73496424	0.81[ASN][1000 genomes]
rs73496435	0.81[ASN][1000 genomes]
rs7927841	0.86[ASN][1000 genomes]
rs9326362	0.81[ASN][1000 genomes]
rs9943575	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
3	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
4	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
6	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
7	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65729800-65746200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:65730600-65767800	Weak transcription	Right Atrium	heart
3	chr11:65730800-65741600	Weak transcription	Fetal Heart	heart
4	chr11:65731000-65738000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:65731000-65744600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:65731200-65738200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:65731200-65738200	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:65731200-65747400	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:65731200-65747800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:65731200-65748600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:65731200-65749600	Strong transcription	Fetal Intestine Small	intestine
12	chr11:65731400-65738000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:65731400-65738000	Strong transcription	Gastric	stomach
14	chr11:65731400-65738200	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr11:65731400-65738200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:65731400-65738200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:65731400-65738200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:65731400-65738200	Strong transcription	Colonic Mucosa	Colon
19	chr11:65731400-65738200	Strong transcription	Fetal Lung	lung
20	chr11:65731400-65738200	Strong transcription	NHLF	lung
21	chr11:65731400-65738400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:65731400-65738400	Strong transcription	Osteobl	bone
23	chr11:65731400-65741600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:65731400-65747600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:65731400-65747600	Strong transcription	Fetal Thymus	thymus
26	chr11:65731400-65748000	Strong transcription	Thymus	Thymus
27	chr11:65731600-65738200	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr11:65731600-65738200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:65731600-65738200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:65731600-65738200	Strong transcription	Fetal Intestine Large	intestine
31	chr11:65731600-65738200	Strong transcription	Pancreas	Pancrea
32	chr11:65731600-65738200	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:65731600-65738400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:65731600-65738400	Strong transcription	Adipose Nuclei	Adipose
35	chr11:65731600-65738400	Strong transcription	Right Ventricle	heart
36	chr11:65731600-65738600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:65731600-65740000	Strong transcription	Ovary	ovary
38	chr11:65731600-65740800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:65731600-65741400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:65731600-65741400	Strong transcription	Left Ventricle	heart
41	chr11:65731600-65741600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:65731600-65741600	Strong transcription	Liver	Liver
43	chr11:65731600-65742400	Strong transcription	Primary T cells from cord blood	blood
44	chr11:65731600-65747400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:65731600-65747800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:65731800-65738000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:65731800-65738000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:65731800-65738000	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr11:65731800-65738000	Strong transcription	Hela-S3	cervix
50	chr11:65731800-65738000	Strong transcription	NH-A	brain

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