The 2.0 version of rSNPBase

Variant report

Variant rs72930638
Chromosome Location chr3:100479461-100479462
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:100450000-100501000 Weak transcription Esophagus oesophagus
2 chr3:100457200-100480200 Weak transcription Brain Angular Gyrus brain
3 chr3:100467400-100497600 Weak transcription Fetal Intestine Small intestine
4 chr3:100468200-100488600 Weak transcription Colon Smooth Muscle Colon
5 chr3:100469400-100480200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr3:100469800-100498200 Weak transcription Brain Cingulate Gyrus brain
7 chr3:100469800-100501400 Weak transcription Rectal Smooth Muscle rectum
8 chr3:100470200-100498400 Weak transcription Right Ventricle heart
9 chr3:100471000-100495800 Weak transcription Placenta Amnion Placenta Amnion
10 chr3:100471200-100480200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr3:100471600-100500400 Weak transcription Lung lung
12 chr3:100471800-100486200 Weak transcription Brain Substantia Nigra brain
13 chr3:100471800-100494600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr3:100471800-100502000 Weak transcription Brain Anterior Caudate brain
15 chr3:100472600-100484600 Weak transcription NHEK skin
16 chr3:100472800-100482800 Weak transcription NHLF lung
17 chr3:100472800-100494400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr3:100473000-100479800 Weak transcription GM12878-XiMat blood
19 chr3:100473000-100480400 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr3:100473400-100480200 Weak transcription A549 lung
21 chr3:100473400-100488400 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr3:100473600-100480000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr3:100473600-100488600 Weak transcription Fetal Muscle Trunk muscle
24 chr3:100473600-100488800 Weak transcription Muscle Satellite Cultured Cells --
25 chr3:100473600-100489200 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr3:100473800-100484600 Weak transcription HMEC breast
27 chr3:100473800-100496400 Weak transcription Fetal Intestine Large intestine
28 chr3:100474000-100488800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr3:100474200-100482400 Weak transcription Stomach Smooth Muscle stomach
30 chr3:100474400-100480600 Weak transcription Primary T cells from cord blood blood
31 chr3:100474400-100484800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr3:100474400-100494200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr3:100474400-100500200 Weak transcription HSMM muscle
34 chr3:100474400-100501200 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr3:100474800-100482800 Weak transcription HSMMtube muscle
36 chr3:100475000-100488000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr3:100475000-100499000 Weak transcription Placenta Placenta
38 chr3:100475600-100485600 Weak transcription Left Ventricle heart
39 chr3:100475600-100487600 Weak transcription NHDF-Ad bronchial
40 chr3:100475600-100520000 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr3:100477200-100480400 Weak transcription H1 Cell Line embryonic stem cell
42 chr3:100477200-100484800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr3:100477400-100480400 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr3:100477600-100480400 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr3:100477600-100480400 Enhancers Fetal Muscle Leg muscle
46 chr3:100477600-100480600 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr3:100477800-100482800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr3:100478000-100481200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr3:100478400-100480200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr3:100478400-100496600 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015