Variant report

Variant	rs72931390
Chromosome Location	chr11:62725837-62725838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:62725805..62728955-chr11:62729371..62732018,3	MCF-7	breast:
2	chr11:62609035..62611358-chr11:62724523..62728104,4	MCF-7	breast:
3	chr11:62720469..62722198-chr11:62725329..62727254,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11568621	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568628	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568629	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052738	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56057734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56192530	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56238281	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56306952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56406487	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57350702	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58244957	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67381592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67406655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931371	0.86[AMR][1000 genomes]
rs72931384	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72931399	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933422	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933451	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72933455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs736342	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947790	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
2	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
3	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62714800-62726800	Weak transcription	Right Atrium	heart
2	chr11:62722000-62726000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:62725800-62726000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr11:62725800-62726200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:62725800-62726600	Enhancers	Colonic Mucosa	Colon
6	chr11:62725800-62727200	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:62725800-62727200	Enhancers	Fetal Intestine Large	intestine
8	chr11:62725800-62727200	Enhancers	Fetal Intestine Small	intestine
9	chr11:62725800-62727200	Enhancers	Ovary	ovary
10	chr11:62725800-62727200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:62725800-62727200	Enhancers	HSMMtube	muscle
12	chr11:62725800-62727400	Enhancers	Brain Germinal Matrix	brain
13	chr11:62725800-62727400	Enhancers	Lung	lung
14	chr11:62725800-62727400	Enhancers	Psoas Muscle	Psoas
15	chr11:62725800-62727400	Enhancers	Right Ventricle	heart
16	chr11:62725800-62727600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr11:62725800-62727600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr11:62725800-62728200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:62725800-62728800	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:62725800-62729000	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links