Variant report

Variant	rs72932252
Chromosome Location	chr4:129498505-129498506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17013484	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17013486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57357435	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57404895	0.88[ASN][1000 genomes]
rs57673046	0.94[ASN][1000 genomes]
rs58160513	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58200674	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59261281	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60593095	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60917665	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60972557	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72932244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72932254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72932256	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72932257	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73846936	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1017672	chr4:129450450-129603977	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129490600-129499600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:129493200-129503600	Weak transcription	K562	blood
3	chr4:129494800-129499000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:129495400-129511000	Weak transcription	Right Ventricle	heart
5	chr4:129495600-129498800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:129495600-129503800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:129495800-129504800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:129496200-129499200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:129496200-129499600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:129496400-129499400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:129496600-129503200	Weak transcription	Pancreas	Pancrea
12	chr4:129498200-129499000	Weak transcription	Fetal Intestine Large	intestine
13	chr4:129498400-129499000	Weak transcription	Fetal Intestine Small	intestine
14	chr4:129498400-129499400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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