Variant report

Variant	rs72932256
Chromosome Location	chr4:129506372-129506373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17013484	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57357435	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57404895	0.82[ASN][1000 genomes]
rs57673046	0.88[ASN][1000 genomes]
rs58160513	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58200674	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59261281	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60593095	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60917665	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60972557	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72932244	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72932252	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72932254	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72932257	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846936	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1017672	chr4:129450450-129603977	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129495400-129511000	Weak transcription	Right Ventricle	heart
2	chr4:129505400-129507000	Enhancers	Placenta	Placenta
3	chr4:129505800-129510200	Weak transcription	Psoas Muscle	Psoas
4	chr4:129505800-129511000	Weak transcription	Left Ventricle	heart
5	chr4:129505800-129511000	Weak transcription	HSMMtube	muscle
6	chr4:129505800-129512000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:129505800-129520400	Weak transcription	Gastric	stomach
8	chr4:129506000-129506800	Weak transcription	Pancreas	Pancrea
9	chr4:129506000-129509200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:129506000-129510000	Weak transcription	Fetal Heart	heart
11	chr4:129506000-129510200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:129506000-129512400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:129506200-129506600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:129506200-129510200	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links