Variant report

Variant	rs72932581
Chromosome Location	chr2:86224047-86224048
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86218233..86221715-chr2:86223462..86225425,3	K562	blood:
2	chr2:86222556..86224773-chr2:86231272..86234204,3	K562	blood:
3	chr2:86217426..86219773-chr2:86221522..86225425,4	K562	blood:
4	chr2:86221261..86224773-chr2:86231605..86235552,4	K562	blood:
5	chr2:86220130..86224322-chr2:86225400..86228402,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11891306	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934506	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7608823	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86216200-86225800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:86219800-86224600	Enhancers	Adipose Nuclei	Adipose
3	chr2:86219800-86226400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr2:86219800-86228600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:86219800-86228800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:86219800-86229000	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:86219800-86229200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:86220400-86227600	Enhancers	Fetal Muscle Trunk	muscle
9	chr2:86220400-86228800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:86220800-86227000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:86220800-86227600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr2:86220800-86228600	Enhancers	Fetal Muscle Leg	muscle
13	chr2:86220800-86228800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr2:86220800-86228800	Enhancers	Fetal Thymus	thymus
15	chr2:86221000-86224600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr2:86221000-86224800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:86221000-86225000	Enhancers	Right Ventricle	heart
18	chr2:86221000-86225600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr2:86221000-86225800	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr2:86221000-86226000	Enhancers	Fetal Heart	heart
21	chr2:86221000-86226400	Enhancers	Colonic Mucosa	Colon
22	chr2:86221000-86227400	Enhancers	Lung	lung
23	chr2:86221000-86228400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr2:86221000-86228600	Enhancers	Primary hematopoietic stem cells	blood
25	chr2:86221000-86228600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr2:86221000-86228600	Enhancers	Spleen	Spleen
27	chr2:86221200-86225800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:86221400-86227600	Enhancers	Brain Cingulate Gyrus	brain
29	chr2:86221400-86228400	Enhancers	Brain Hippocampus Middle	brain
30	chr2:86221400-86228600	Enhancers	Placenta	Placenta
31	chr2:86221600-86224800	Weak transcription	HSMMtube	muscle
32	chr2:86221600-86225600	Weak transcription	HSMM	muscle
33	chr2:86221600-86228400	Enhancers	Right Atrium	heart
34	chr2:86221800-86226400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr2:86222000-86226000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:86222200-86224400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:86222200-86225600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr2:86222200-86226400	Enhancers	Primary B cells from cord blood	blood
39	chr2:86222600-86225800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:86222600-86226000	Enhancers	Ovary	ovary
41	chr2:86222600-86226800	Enhancers	Brain Anterior Caudate	brain
42	chr2:86222600-86228400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr2:86222600-86228600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:86222600-86229000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr2:86222800-86225000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:86222800-86225400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:86222800-86225400	Enhancers	GM12878-XiMat	blood
48	chr2:86222800-86225600	Enhancers	Rectal Smooth Muscle	rectum
49	chr2:86222800-86226800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr2:86222800-86228400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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