Variant report

Variant	rs11891306
Chromosome Location	chr2:86215765-86215766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86203428..86205643-chr2:86215451..86219080,3	K562	blood:
2	chr2:86213970..86216598-chr2:86224690..86226191,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1124687	1.00[EUR][1000 genomes]
rs11845	1.00[EUR][1000 genomes]
rs11884765	1.00[EUR][1000 genomes]
rs11888445	1.00[EUR][1000 genomes]
rs11891814	1.00[EUR][1000 genomes]
rs11895510	1.00[EUR][1000 genomes]
rs11901601	1.00[EUR][1000 genomes]
rs17026940	1.00[EUR][1000 genomes]
rs17027017	1.00[EUR][1000 genomes]
rs2228352	1.00[EUR][1000 genomes]
rs6710042	1.00[EUR][1000 genomes]
rs6724856	1.00[EUR][1000 genomes]
rs6734409	1.00[EUR][1000 genomes]
rs725047	1.00[EUR][1000 genomes]
rs72932581	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7592378	1.00[EUR][1000 genomes]
rs7593975	1.00[EUR][1000 genomes]
rs7608823	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001104	chr2:86182021-86271923	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv535807	chr2:86182021-86271923	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86204000-86221000	Weak transcription	Right Atrium	heart
2	chr2:86207000-86223400	Weak transcription	Liver	Liver
3	chr2:86207600-86219800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:86211800-86215800	Weak transcription	Thymus	Thymus
5	chr2:86213800-86217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:86214200-86216800	Enhancers	Fetal Muscle Trunk	muscle
7	chr2:86214400-86216200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:86214400-86216200	Enhancers	Colon Smooth Muscle	Colon
9	chr2:86214400-86216400	Enhancers	Adipose Nuclei	Adipose
10	chr2:86214400-86216400	Enhancers	Fetal Stomach	stomach
11	chr2:86214400-86217800	Enhancers	Fetal Muscle Leg	muscle
12	chr2:86214600-86216000	Enhancers	NHDF-Ad	bronchial
13	chr2:86214600-86216200	Enhancers	Rectal Smooth Muscle	rectum
14	chr2:86214600-86216400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:86214600-86216400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr2:86214600-86218400	Enhancers	K562	blood
17	chr2:86214600-86221200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr2:86214800-86216000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:86214800-86216000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:86214800-86216200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr2:86214800-86217200	Enhancers	Placenta	Placenta
22	chr2:86215000-86216000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr2:86215000-86216000	Enhancers	Hela-S3	cervix
24	chr2:86215000-86216200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:86215000-86216400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:86215000-86216600	Enhancers	Stomach Smooth Muscle	stomach
27	chr2:86215200-86216000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:86215200-86216400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr2:86215400-86216000	Enhancers	Fetal Lung	lung
30	chr2:86215400-86216000	Enhancers	NHEK	skin
31	chr2:86215400-86216200	Enhancers	Ovary	ovary
32	chr2:86215600-86215800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr2:86215600-86215800	Enhancers	Right Ventricle	heart
34	chr2:86215600-86215800	Enhancers	Spleen	Spleen
35	chr2:86215600-86216000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr2:86215600-86216000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:86215600-86216200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:86215600-86216200	Enhancers	Fetal Thymus	thymus
39	chr2:86215600-86217800	Enhancers	Psoas Muscle	Psoas
40	chr2:86215600-86221000	Weak transcription	HSMM	muscle

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