The 2.0 version of rSNPBase

Variant report

Variant rs11888445
Chromosome Location chr2:86155611-86155612
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86142200-86155800 Weak transcription Primary T cells from cord blood blood
2 chr2:86142400-86157800 Weak transcription Aorta Aorta
3 chr2:86148600-86156200 Weak transcription NH-A brain
4 chr2:86149400-86157400 Weak transcription Pancreas Pancrea
5 chr2:86149800-86157200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr2:86149800-86157400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr2:86151600-86156400 Enhancers Placenta Placenta
8 chr2:86152200-86163400 Weak transcription Fetal Muscle Trunk muscle
9 chr2:86152400-86156200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr2:86152400-86163000 Weak transcription Rectal Smooth Muscle rectum
11 chr2:86152800-86161000 Weak transcription Liver Liver
12 chr2:86152800-86162400 Weak transcription Right Atrium heart
13 chr2:86153000-86156200 Weak transcription Ovary ovary
14 chr2:86153000-86157200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr2:86153200-86157200 Weak transcription Fetal Muscle Leg muscle
16 chr2:86153400-86158800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr2:86154400-86155800 Weak transcription Primary monocytes fromperipheralblood blood
18 chr2:86154400-86161000 Weak transcription Stomach Mucosa stomach
19 chr2:86154600-86157200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr2:86154600-86157600 Weak transcription NHEK skin
21 chr2:86154800-86156200 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr2:86154800-86156200 Enhancers Primary Natural Killer cells fromperipheralblood blood
23 chr2:86154800-86156400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr2:86154800-86156800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr2:86154800-86156800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr2:86154800-86157200 Weak transcription Adipose Nuclei Adipose
27 chr2:86154800-86157400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr2:86154800-86157600 Weak transcription HMEC breast
29 chr2:86154800-86157800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:86154800-86160400 Weak transcription Osteobl bone
31 chr2:86154800-86162800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr2:86155000-86156000 Weak transcription Hela-S3 cervix
33 chr2:86155000-86156200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr2:86155000-86156400 Weak transcription Brain Hippocampus Middle brain
35 chr2:86155000-86157000 Weak transcription Brain Substantia Nigra brain
36 chr2:86155000-86162600 Weak transcription Brain Angular Gyrus brain
37 chr2:86155000-86162600 Weak transcription Brain Cingulate Gyrus brain
38 chr2:86155200-86156800 Weak transcription A549 lung
39 chr2:86155200-86156800 Weak transcription K562 blood
40 chr2:86155200-86157400 Weak transcription Brain Anterior Caudate brain
41 chr2:86155200-86157600 Weak transcription Spleen Spleen
42 chr2:86155200-86162600 Weak transcription Brain Inferior Temporal Lobe brain
43 chr2:86155400-86155800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr2:86155400-86156000 Enhancers Primary T cells fromperipheralblood blood
45 chr2:86155400-86156000 Enhancers Primary T helper cells PMA-I stimulated --
46 chr2:86155400-86156200 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr2:86155400-86159200 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr2:86155600-86155800 Flanking Active TSS Fetal Thymus thymus

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Last update: Aug 31, 2015