Variant report

Variant	rs72936230
Chromosome Location	chr3:112156188-112156189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112046007..112046874-chr3:112156015..112156737,3	MCF-7	breast:
2	chr3:112052345..112054034-chr3:112155349..112157049,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16859562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859584	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859652	1.00[AMR][1000 genomes]
rs56735831	0.83[AFR][1000 genomes]
rs61192341	0.95[AFR][1000 genomes]
rs6800096	1.00[AMR][1000 genomes]
rs72936206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936239	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936255	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936292	0.90[AFR][1000 genomes]
rs72936297	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591294	chr3:112091220-112208750	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv3331778	chr3:112134311-112164058	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv591300	chr3:112144026-112270857	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1006065	chr3:112147080-112276983	Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112151800-112156600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:112155000-112156200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:112155400-112156600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:112155600-112156600	Enhancers	Placenta	Placenta
5	chr3:112155600-112157000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:112155600-112157000	ZNF genes & repeats	GM12878-XiMat	blood
7	chr3:112155800-112156600	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:112155800-112156800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr3:112155800-112156800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:112155800-112157000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:112155800-112157000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:112156000-112156400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:112156000-112156400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:112156000-112156600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:112156000-112156600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:112156000-112156600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:112156000-112156600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:112156000-112157000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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