Variant report

Variant	rs72936239
Chromosome Location	chr3:112158560-112158561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16859562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16859652	1.00[AMR][1000 genomes]
rs61192341	1.00[AFR][1000 genomes]
rs6800096	1.00[AMR][1000 genomes]
rs72936206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936230	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936290	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936292	0.85[AFR][1000 genomes]
rs72936297	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72954456	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591294	chr3:112091220-112208750	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv3331778	chr3:112134311-112164058	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv591300	chr3:112144026-112270857	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1006065	chr3:112147080-112276983	Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112157600-112165200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:112157800-112165200	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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