Variant report

Variant	rs72936991
Chromosome Location	chr18:8942634-8942635
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8929615..8931868-chr18:8941295..8944076,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72942380	1.00[AMR][1000 genomes]
rs72942780	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8929200-8942800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:8934200-8943200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr18:8937600-8942800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:8937600-8948000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:8938200-8943600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr18:8938200-8943600	Weak transcription	HMEC	breast
7	chr18:8938800-8943400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:8939000-8943800	Weak transcription	NHEK	skin
9	chr18:8939000-8945000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr18:8939000-8945800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:8939200-8943000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr18:8939200-8943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr18:8939200-8943200	Weak transcription	HSMMtube	muscle
14	chr18:8939200-8944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr18:8939400-8944200	Weak transcription	Primary B cells from cord blood	blood
16	chr18:8939600-8943800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr18:8939600-8945000	Weak transcription	Fetal Thymus	thymus
18	chr18:8939800-8942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:8940000-8944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr18:8940600-8945400	Enhancers	Brain Germinal Matrix	brain
21	chr18:8941000-8943800	Enhancers	K562	blood
22	chr18:8941200-8943400	Enhancers	Fetal Brain Male	brain
23	chr18:8941600-8943200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr18:8941600-8943200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr18:8941800-8943000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr18:8941800-8943200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:8941800-8943400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr18:8941800-8948800	Enhancers	NHDF-Ad	bronchial
29	chr18:8942000-8942800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr18:8942000-8943000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr18:8942000-8943000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:8942000-8943200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:8942000-8943200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr18:8942000-8943200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr18:8942000-8943400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr18:8942000-8943800	Enhancers	Osteobl	bone
37	chr18:8942000-8944400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr18:8942000-8946000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr18:8942000-8946000	Enhancers	NH-A	brain
40	chr18:8942000-8946000	Enhancers	NHLF	lung
41	chr18:8942200-8943400	Enhancers	H1 Cell Line	embryonic stem cell
42	chr18:8942200-8944400	Enhancers	Placenta Amnion	Placenta Amnion
43	chr18:8942400-8943400	Weak transcription	HSMM	muscle
44	chr18:8942400-8943600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr18:8942600-8943600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr18:8942600-8943600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr18:8942600-8946000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links