Variant report

Variant	rs72942780
Chromosome Location	chr18:9004739-9004740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12605735	0.90[EUR][1000 genomes]
rs12605754	0.90[EUR][1000 genomes]
rs12959948	1.00[AFR][1000 genomes]
rs34074572	1.00[AFR][1000 genomes]
rs66469248	0.90[EUR][1000 genomes]
rs66781209	0.82[EUR][1000 genomes]
rs67217398	0.90[EUR][1000 genomes]
rs67743220	0.90[EUR][1000 genomes]
rs72936991	1.00[AMR][1000 genomes]
rs72942380	1.00[AMR][1000 genomes]
rs72944708	1.00[AFR][1000 genomes]
rs9947345	0.90[EUR][1000 genomes]
rs9956612	0.90[EUR][1000 genomes]
rs9967281	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9001600-9005400	Weak transcription	Osteobl	bone
2	chr18:9003400-9005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr18:9004600-9005600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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