Variant report

Variant	rs72944708
Chromosome Location	chr18:9026483-9026484
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12959948	1.00[AFR][1000 genomes]
rs1481041	1.00[AMR][1000 genomes]
rs34074572	1.00[AFR][1000 genomes]
rs72942780	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9018400-9028600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr18:9022800-9044800	Weak transcription	Right Atrium	heart
3	chr18:9023000-9028400	Weak transcription	NHEK	skin
4	chr18:9023000-9033200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:9023200-9029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr18:9024400-9027000	Enhancers	K562	blood
7	chr18:9024400-9030000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr18:9025000-9026600	Enhancers	HSMM	muscle
9	chr18:9025000-9026600	Enhancers	NHDF-Ad	bronchial
10	chr18:9026000-9029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr18:9026200-9028800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr18:9026400-9028600	Weak transcription	HSMMtube	muscle
13	chr18:9026400-9029000	Weak transcription	Osteobl	bone
14	chr18:9026400-9029200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links