Variant report

Variant	rs72938099
Chromosome Location	chr2:206095025-206095026
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10490300	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16837099	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72936153	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72938094	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72940308	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72940317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72940320	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72940321	0.81[EUR][1000 genomes]
rs72940324	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72940327	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72940337	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206075200-206100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:206081000-206098600	Weak transcription	Fetal Lung	lung
3	chr2:206082400-206100800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:206083000-206100400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:206085800-206120800	Weak transcription	Left Ventricle	heart
6	chr2:206089400-206096600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:206090000-206110600	Weak transcription	Brain Anterior Caudate	brain
8	chr2:206092400-206096200	Weak transcription	HSMM	muscle
9	chr2:206092800-206096400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:206092800-206096600	Weak transcription	Aorta	Aorta
11	chr2:206093200-206098400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:206093200-206113200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:206093400-206102200	Weak transcription	Adipose Nuclei	Adipose
14	chr2:206094000-206095200	Weak transcription	Liver	Liver
15	chr2:206094000-206099600	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:206094200-206095600	Strong transcription	Fetal Intestine Small	intestine
17	chr2:206094200-206095600	Strong transcription	Stomach Smooth Muscle	stomach
18	chr2:206094200-206095800	ZNF genes & repeats	Fetal Stomach	stomach
19	chr2:206094200-206096200	Weak transcription	Ovary	ovary
20	chr2:206094200-206097000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr2:206094400-206096200	Weak transcription	Fetal Intestine Large	intestine
22	chr2:206094400-206097200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr2:206094600-206096800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:206094600-206116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:206094800-206097800	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:206094800-206104200	Weak transcription	Pancreas	Pancrea
27	chr2:206095000-206095200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
28	chr2:206095000-206095600	ZNF genes & repeats	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links