Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206106489..206108095-chr2:206108566..206111102,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1540360	0.85[EUR][1000 genomes]
rs57964434	0.85[EUR][1000 genomes]
rs6737756	0.83[EUR][1000 genomes]
rs6752823	0.87[EUR][1000 genomes]
rs72936153	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72938094	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72938099	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72940308	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72940317	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72940321	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72940324	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72940327	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72940337	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72940348	0.81[EUR][1000 genomes]
rs72940357	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206085800-206120800	Weak transcription	Left Ventricle	heart
2	chr2:206090000-206110600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:206093200-206113200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:206094600-206116000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:206095800-206113200	Weak transcription	Liver	Liver
6	chr2:206097200-206118000	Weak transcription	Aorta	Aorta
7	chr2:206097200-206170600	Weak transcription	HSMMtube	muscle
8	chr2:206108400-206145200	Weak transcription	HSMM	muscle
9	chr2:206109400-206111400	Enhancers	Colon Smooth Muscle	Colon
10	chr2:206109600-206110200	Enhancers	Adipose Nuclei	Adipose
11	chr2:206109600-206110400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:206109600-206110600	Enhancers	Ovary	ovary
13	chr2:206109800-206110000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:206109800-206110000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:206109800-206110000	Enhancers	Brain Hippocampus Middle	brain
16	chr2:206109800-206110000	Enhancers	Fetal Stomach	stomach
17	chr2:206109800-206110200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:206109800-206110600	Enhancers	Rectal Smooth Muscle	rectum
19	chr2:206109800-206111000	Enhancers	HUVEC	blood vessel
20	chr2:206109800-206111400	Enhancers	NHDF-Ad	bronchial
21	chr2:206109800-206111600	Enhancers	Osteobl	bone

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