Variant report

Variant	rs72945237
Chromosome Location	chr1:70531980-70531981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17131147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131153	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131194	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131197	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131198	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58361762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72915800	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917809	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs970938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs970939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv461795	chr1:70475794-70551339	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546453	chr1:70475794-70551339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv461806	chr1:70494216-70566981	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546454	chr1:70494216-70566981	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70505000-70549400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:70505400-70536200	Weak transcription	Fetal Brain Female	brain
3	chr1:70506000-70536400	Weak transcription	Brain Germinal Matrix	brain
4	chr1:70527600-70549200	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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