The 2.0 version of rSNPBase

Variant report

Variant rs72948425
Chromosome Location chr1:84947190-84947191
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84945600-84949000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:84945800-84947200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
3 chr1:84946000-84947400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
4 chr1:84946000-84947400 Enhancers Fetal Heart heart
5 chr1:84946000-84947400 Enhancers Small Intestine intestine
6 chr1:84946000-84948600 Weak transcription Fetal Muscle Trunk muscle
7 chr1:84946000-84949000 Weak transcription H9 Cell Line embryonic stem cell
8 chr1:84946000-84949000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:84946000-84956400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:84946000-84956400 Weak transcription Gastric stomach
11 chr1:84946000-84956400 Weak transcription Spleen Spleen
12 chr1:84946000-84965800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr1:84946000-84967000 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr1:84946000-84969600 Weak transcription Esophagus oesophagus
15 chr1:84946000-84970400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:84946000-84970800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr1:84946200-84947200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:84946200-84947200 Flanking Active TSS Hela-S3 cervix
19 chr1:84946200-84947400 Enhancers Colon Smooth Muscle Colon
20 chr1:84946200-84947600 Weak transcription Brain Substantia Nigra brain
21 chr1:84946200-84948600 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr1:84946200-84948600 Enhancers Primary T helper 17 cells PMA-I stimulated --
23 chr1:84946200-84949000 Weak transcription Fetal Stomach stomach
24 chr1:84946200-84949200 Weak transcription H1 Cell Line embryonic stem cell
25 chr1:84946200-84955200 Weak transcription Right Ventricle heart
26 chr1:84946200-84956200 Weak transcription Colonic Mucosa Colon
27 chr1:84946200-84962800 Weak transcription HSMMtube muscle
28 chr1:84946400-84947200 Enhancers Adipose Nuclei Adipose
29 chr1:84946400-84947200 Enhancers Liver Liver
30 chr1:84946400-84947200 Enhancers Brain Hippocampus Middle brain
31 chr1:84946400-84947200 Enhancers Fetal Intestine Large intestine
32 chr1:84946400-84947200 Enhancers Stomach Smooth Muscle stomach
33 chr1:84946400-84947200 Enhancers NHLF lung
34 chr1:84946400-84947400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:84946400-84947400 Enhancers Fetal Intestine Small intestine
36 chr1:84946400-84947400 Enhancers Rectal Smooth Muscle rectum
37 chr1:84946400-84947400 Enhancers NHEK skin
38 chr1:84946400-84947600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:84946400-84947600 Enhancers HepG2 liver
40 chr1:84946400-84947800 Weak transcription iPS-18 Cell Line embryonic stem cell
41 chr1:84946400-84948000 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr1:84946400-84948200 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr1:84946400-84948600 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:84946400-84948600 Weak transcription Osteobl bone
45 chr1:84946400-84948800 Enhancers Primary T helper naive cells from peripheral blood blood
46 chr1:84946400-84949000 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr1:84946400-84949400 Weak transcription NH-A brain
48 chr1:84946400-84955200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr1:84946400-84955600 Weak transcription Placenta Amnion Placenta Amnion
50 chr1:84946400-84956200 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015