Variant report

Variant	rs72951518
Chromosome Location	chr6:118020726-118020727
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11751090	0.85[AFR][1000 genomes]
rs13202506	0.85[AFR][1000 genomes]
rs17079416	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45529441	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45554533	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55879925	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56356719	1.00[ASN][1000 genomes]
rs72951503	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951504	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951508	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951509	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951512	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951515	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951525	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951537	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951553	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969285	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72969286	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117998200-118025800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:117998200-118026400	Weak transcription	Esophagus	oesophagus
3	chr6:117998800-118023000	Weak transcription	HSMMtube	muscle
4	chr6:117999000-118039800	Weak transcription	Gastric	stomach
5	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:117999200-118028200	Weak transcription	Hela-S3	cervix
7	chr6:117999200-118029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:118000800-118029400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:118001200-118027400	Weak transcription	Thymus	Thymus
10	chr6:118002600-118027600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:118003000-118026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:118003800-118026600	Weak transcription	Lung	lung
13	chr6:118006000-118026600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:118008800-118029600	Weak transcription	Colonic Mucosa	Colon
15	chr6:118009400-118039800	Weak transcription	Small Intestine	intestine
16	chr6:118012600-118024600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:118012600-118039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:118013800-118024800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:118014400-118029000	Weak transcription	A549	lung
20	chr6:118014600-118022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:118015600-118030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:118016600-118029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:118016600-118040000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:118016800-118023000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:118016800-118024200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:118016800-118024800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:118016800-118024800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:118016800-118025000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:118016800-118025200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:118016800-118026400	Weak transcription	Aorta	Aorta
31	chr6:118016800-118028800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:118016800-118029400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:118016800-118032400	Weak transcription	Fetal Stomach	stomach
34	chr6:118017000-118022000	Weak transcription	NHEK	skin
35	chr6:118017000-118023200	Weak transcription	Fetal Muscle Leg	muscle
36	chr6:118017000-118023200	Weak transcription	Left Ventricle	heart
37	chr6:118017000-118023400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:118017000-118024200	Weak transcription	Ovary	ovary
39	chr6:118017000-118024400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:118017000-118025200	Weak transcription	NHLF	lung
41	chr6:118017000-118026600	Weak transcription	Right Ventricle	heart
42	chr6:118017000-118029800	Weak transcription	Brain Substantia Nigra	brain
43	chr6:118017000-118033200	Weak transcription	Fetal Intestine Small	intestine
44	chr6:118017000-118040000	Weak transcription	Pancreas	Pancrea
45	chr6:118017200-118021600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:118017200-118026000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr6:118017400-118025800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:118017400-118026600	Weak transcription	Brain Germinal Matrix	brain
49	chr6:118017600-118024400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:118017600-118029400	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links