Variant report

Variant	rs72952106
Chromosome Location	chr1:85063195-85063196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11800617	1.00[EUR][1000 genomes]
rs11801376	1.00[EUR][1000 genomes]
rs11801784	1.00[EUR][1000 genomes]
rs11802361	1.00[EUR][1000 genomes]
rs11806835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2911574	1.00[EUR][1000 genomes]
rs34769319	1.00[EUR][1000 genomes]
rs57295979	1.00[EUR][1000 genomes]
rs6576716	1.00[EUR][1000 genomes]
rs6688331	1.00[EUR][1000 genomes]
rs72948493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948498	1.00[EUR][1000 genomes]
rs72950307	1.00[EUR][1000 genomes]
rs72950320	1.00[EUR][1000 genomes]
rs72950348	1.00[EUR][1000 genomes]
rs72950351	1.00[EUR][1000 genomes]
rs72950354	1.00[EUR][1000 genomes]
rs72950365	1.00[EUR][1000 genomes]
rs72950367	1.00[EUR][1000 genomes]
rs72950382	1.00[EUR][1000 genomes]
rs72952111	1.00[EUR][1000 genomes]
rs72952122	1.00[EUR][1000 genomes]
rs72952123	1.00[EUR][1000 genomes]
rs7517918	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85051000-85069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:85052000-85064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:85062400-85063800	Enhancers	Fetal Heart	heart
4	chr1:85062600-85063200	Enhancers	Stomach Mucosa	stomach
5	chr1:85062600-85064400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:85062800-85063200	Enhancers	GM12878-XiMat	blood
7	chr1:85062800-85064400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:85062800-85066800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links