The 2.0 version of rSNPBase

Variant report

Variant rs57295979
Chromosome Location chr1:85036602-85036603
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84991000-85038200 Weak transcription Thymus Thymus
2 chr1:84992400-85038800 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:84998600-85038800 Weak transcription Right Ventricle heart
4 chr1:85002000-85038400 Weak transcription Aorta Aorta
5 chr1:85006600-85038600 Weak transcription Stomach Smooth Muscle stomach
6 chr1:85007200-85038600 Weak transcription Rectal Smooth Muscle rectum
7 chr1:85008800-85039000 Weak transcription Fetal Brain Male brain
8 chr1:85009400-85037000 Weak transcription HUVEC blood vessel
9 chr1:85014800-85039600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:85017400-85039600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:85019200-85038400 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr1:85022000-85038800 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:85024800-85038800 Weak transcription Brain Angular Gyrus brain
14 chr1:85025400-85037000 Weak transcription Small Intestine intestine
15 chr1:85025600-85038800 Weak transcription HSMMtube muscle
16 chr1:85025800-85038800 Weak transcription Brain Substantia Nigra brain
17 chr1:85025800-85038800 Weak transcription Fetal Heart heart
18 chr1:85026200-85038800 Weak transcription Brain Cingulate Gyrus brain
19 chr1:85027200-85037000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
20 chr1:85027200-85038600 Weak transcription Brain Inferior Temporal Lobe brain
21 chr1:85027400-85037600 Weak transcription HepG2 liver
22 chr1:85027800-85038600 Weak transcription Fetal Kidney kidney
23 chr1:85028000-85038600 Weak transcription Fetal Lung lung
24 chr1:85028200-85037000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:85028200-85038800 Weak transcription Brain Hippocampus Middle brain
26 chr1:85028200-85038800 Weak transcription HSMM muscle
27 chr1:85028800-85039600 Weak transcription Gastric stomach
28 chr1:85029000-85037400 Weak transcription Dnd41 blood
29 chr1:85029000-85038800 Weak transcription A549 lung
30 chr1:85029200-85038600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:85029600-85038600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:85030800-85038800 Weak transcription Fetal Stomach stomach
33 chr1:85031000-85037400 Weak transcription Fetal Intestine Small intestine
34 chr1:85031000-85038200 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:85031200-85038600 Weak transcription Brain Anterior Caudate brain
36 chr1:85032200-85037000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:85032200-85038600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:85032800-85038600 Weak transcription Psoas Muscle Psoas
39 chr1:85033200-85036800 Strong transcription Primary T regulatory cells fromperipheralblood blood
40 chr1:85033200-85037000 Strong transcription Primary T cells from cord blood blood
41 chr1:85033600-85036800 Strong transcription Primary B cells from cord blood blood
42 chr1:85033600-85036800 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr1:85033600-85037400 Weak transcription H1 Cell Line embryonic stem cell
44 chr1:85033800-85037200 Strong transcription Rectal Mucosa Donor 29 rectum
45 chr1:85034000-85038800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr1:85034200-85037400 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr1:85034600-85039400 Weak transcription Esophagus oesophagus
48 chr1:85035200-85038400 Weak transcription Spleen Spleen
49 chr1:85035400-85036800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
50 chr1:85035400-85037200 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015