Variant report

Variant	rs17099163
Chromosome Location	chr1:85018648-85018649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84975237..84977774-chr1:85017252..85019567,2	K562	blood:
2	chr1:85015983..85018736-chr1:85033497..85036194,2	K562	blood:
3	chr1:85011436..85014367-chr1:85018329..85020155,2	K562	blood:
4	chr1:85016872..85022565-chr1:85023901..85028271,6	K562	blood:
5	chr1:84974456..84976737-chr1:85018067..85020188,2	K562	blood:
6	chr1:85017860..85022102-chr1:85039159..85041384,4	K562	blood:
7	chr1:84970283..84974194-chr1:85018382..85022945,7	K562	blood:

Variant related genes	Relation type
ENSG00000174021	Chromatin interaction
ENSG00000117151	Chromatin interaction
ENSG00000122432	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1043493	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493753	1.00[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs11164003	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11164009	0.91[GIH][hapmap]
rs1156435	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801891	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802781	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11804372	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110157	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs17110695	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17110700	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17110865	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111233	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111283	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17111299	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111308	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111351	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111464	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111498	1.00[CEU][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs17112191	1.00[ASN][1000 genomes]
rs17112247	1.00[ASN][1000 genomes]
rs17131722	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17131723	1.00[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs56935748	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57295979	1.00[ASN][1000 genomes]
rs57674741	1.00[ASN][1000 genomes]
rs58273089	0.89[EUR][1000 genomes]
rs58339631	0.89[EUR][1000 genomes]
rs59441149	0.89[EUR][1000 genomes]
rs59898877	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61699375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681870	0.91[GIH][hapmap]
rs6683385	0.89[EUR][1000 genomes]
rs6688208	1.00[CEU][hapmap]
rs72950323	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950341	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517918	1.00[ASN][1000 genomes]
rs7524406	1.00[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528067	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7530632	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533783	1.00[ASN][1000 genomes]
rs7547026	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9782922	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84975200-85019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:84975800-85030200	Weak transcription	Fetal Intestine Small	intestine
3	chr1:84982400-85026800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:84988200-85020600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:84991000-85034200	Weak transcription	Esophagus	oesophagus
6	chr1:84991000-85038200	Weak transcription	Thymus	Thymus
7	chr1:84991800-85026800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr1:84992200-85026000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:84992400-85019400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:84992400-85038800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:84992600-85021200	Weak transcription	NHDF-Ad	bronchial
12	chr1:84993200-85025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:84993400-85025800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:84993400-85027000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:84993600-85026800	Weak transcription	HSMM	muscle
16	chr1:84994000-85026600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:84995000-85028600	Weak transcription	Fetal Intestine Large	intestine
18	chr1:84995400-85020600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:84998600-85038800	Weak transcription	Right Ventricle	heart
20	chr1:85000800-85027400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:85001400-85036400	Weak transcription	NH-A	brain
22	chr1:85001600-85033600	Weak transcription	NHLF	lung
23	chr1:85001800-85021400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr1:85001800-85026600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:85001800-85028600	Weak transcription	Fetal Thymus	thymus
26	chr1:85002000-85038400	Weak transcription	Aorta	Aorta
27	chr1:85002200-85027600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr1:85002200-85034200	Weak transcription	Lung	lung
29	chr1:85003000-85027800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:85003800-85026000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:85003800-85033600	Weak transcription	Left Ventricle	heart
32	chr1:85004000-85036400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:85005000-85019800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:85005000-85020400	Weak transcription	GM12878-XiMat	blood
35	chr1:85005200-85035000	Weak transcription	Pancreas	Pancrea
36	chr1:85006200-85019400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:85006200-85027800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:85006200-85034600	Weak transcription	Ovary	ovary
39	chr1:85006200-85034800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:85006400-85034400	Weak transcription	Colon Smooth Muscle	Colon
41	chr1:85006600-85038600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr1:85006800-85027000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr1:85007000-85024600	Weak transcription	Osteobl	bone
44	chr1:85007000-85024800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr1:85007200-85027200	Weak transcription	Fetal Lung	lung
46	chr1:85007200-85038600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr1:85007400-85027800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr1:85007600-85026400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr1:85008600-85024400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:85008800-85039000	Weak transcription	Fetal Brain Male	brain

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