Variant report

Variant	rs58339631
Chromosome Location	chr1:84980243-84980244
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84969814..84972112-chr1:84979251..84980866,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122432	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1043493	0.89[EUR][1000 genomes]
rs10493753	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164003	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1156435	0.86[EUR][1000 genomes]
rs11801891	0.89[EUR][1000 genomes]
rs11802781	0.89[EUR][1000 genomes]
rs11804372	0.89[EUR][1000 genomes]
rs17099163	0.89[EUR][1000 genomes]
rs17110157	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111233	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111283	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17111299	0.89[EUR][1000 genomes]
rs17111308	0.89[EUR][1000 genomes]
rs17111314	0.89[EUR][1000 genomes]
rs17111351	0.89[EUR][1000 genomes]
rs17111464	0.89[EUR][1000 genomes]
rs17111498	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17131722	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131723	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935748	0.89[EUR][1000 genomes]
rs58273089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59441149	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59898877	0.89[EUR][1000 genomes]
rs61699375	0.89[EUR][1000 genomes]
rs6683385	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950323	0.89[EUR][1000 genomes]
rs72950341	0.89[EUR][1000 genomes]
rs7524406	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7528067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7530632	0.89[EUR][1000 genomes]
rs9782922	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84973000-85003200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:84973200-84982200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:84973200-84982200	Weak transcription	NHDF-Ad	bronchial
4	chr1:84973200-85003200	Weak transcription	Adipose Nuclei	Adipose
5	chr1:84973400-84991600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:84973400-84993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:84973400-84994400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:84973400-84995200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:84973400-85002000	Weak transcription	Primary T cells from cord blood	blood
10	chr1:84973600-84984600	Weak transcription	Fetal Heart	heart
11	chr1:84974000-84982200	Weak transcription	Aorta	Aorta
12	chr1:84974200-84991400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:84975200-85019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:84975800-85030200	Weak transcription	Fetal Intestine Small	intestine
15	chr1:84977600-84991600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:84979600-84994400	Weak transcription	Primary B cells from cord blood	blood

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