Variant report

Variant	rs17131723
Chromosome Location	chr1:84929500-84929501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84928850..84931617-chr1:84944239..84946361,2	MCF-7	breast:
2	chr1:84928129..84930451-chr1:84943094..84944929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117133	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1043493	0.85[GIH][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs10493753	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11164003	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1156435	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs11801891	0.89[EUR][1000 genomes]
rs11802781	0.89[EUR][1000 genomes]
rs11804372	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17099163	1.00[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs17109966	1.00[ASW][hapmap];0.88[LWK][hapmap]
rs17110157	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110695	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110700	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110865	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111233	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111283	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17111299	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111308	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs17111314	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111351	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111464	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs17111498	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17131722	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935748	0.89[EUR][1000 genomes]
rs58273089	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58339631	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59441149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59605677	0.85[AMR][1000 genomes]
rs59898877	0.89[EUR][1000 genomes]
rs61304651	0.85[AMR][1000 genomes]
rs61699375	0.89[EUR][1000 genomes]
rs6683385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6688208	1.00[CEU][hapmap]
rs72950323	0.89[EUR][1000 genomes]
rs72950341	0.89[EUR][1000 genomes]
rs7524406	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7528067	1.00[CEU][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];0.84[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7530632	0.89[EUR][1000 genomes]
rs7547026	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs9782922	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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