Variant report

Variant	rs7547026
Chromosome Location	chr1:85030053-85030054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:85022443..85024942-chr1:85030020..85032118,2	K562	blood:
2	chr1:84972325..84974748-chr1:85028304..85030920,3	K562	blood:
3	chr1:84971980..84974064-chr1:85028414..85031308,2	K562	blood:

Variant related genes	Relation type
ENSG00000174021	Chromatin interaction
ENSG00000122432	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1043493	0.87[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10493753	1.00[CEU][hapmap]
rs11164003	1.00[CEU][hapmap]
rs1156435	0.87[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11801891	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11802781	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11804372	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12095492	0.81[ASN][1000 genomes]
rs17099163	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17110157	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17110695	1.00[CEU][hapmap]
rs17110700	1.00[CEU][hapmap]
rs17110865	1.00[CEU][hapmap]
rs17111233	1.00[CEU][hapmap]
rs17111283	1.00[CEU][hapmap]
rs17111299	1.00[CEU][hapmap]
rs17111308	1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs17111314	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs17111351	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17111440	0.81[CHB][hapmap];0.96[CHD][hapmap];0.81[JPT][hapmap]
rs17111464	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17111498	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.80[ASN][1000 genomes]
rs17131722	1.00[CEU][hapmap]
rs17131723	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs3768248	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs59898877	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs61699375	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6688208	1.00[CEU][hapmap]
rs72950341	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7524406	1.00[CEU][hapmap]
rs7528067	1.00[CEU][hapmap]
rs7533783	0.81[AMR][1000 genomes]
rs9782922	1.00[CEU][hapmap]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84975800-85030200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:84991000-85034200	Weak transcription	Esophagus	oesophagus
3	chr1:84991000-85038200	Weak transcription	Thymus	Thymus
4	chr1:84992400-85038800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:84998600-85038800	Weak transcription	Right Ventricle	heart
6	chr1:85001400-85036400	Weak transcription	NH-A	brain
7	chr1:85001600-85033600	Weak transcription	NHLF	lung
8	chr1:85002000-85038400	Weak transcription	Aorta	Aorta
9	chr1:85002200-85034200	Weak transcription	Lung	lung
10	chr1:85003800-85033600	Weak transcription	Left Ventricle	heart
11	chr1:85004000-85036400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:85005200-85035000	Weak transcription	Pancreas	Pancrea
13	chr1:85006200-85034600	Weak transcription	Ovary	ovary
14	chr1:85006200-85034800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:85006400-85034400	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:85006600-85038600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:85007200-85038600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:85008800-85039000	Weak transcription	Fetal Brain Male	brain
19	chr1:85009400-85037000	Weak transcription	HUVEC	blood vessel
20	chr1:85014800-85039600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:85016600-85036400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr1:85017400-85036400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr1:85017400-85039600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:85019200-85038400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:85019400-85032200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:85019800-85030200	Weak transcription	NHEK	skin
27	chr1:85022000-85038800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:85022400-85034400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:85023400-85031400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:85023400-85034600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:85023400-85036400	Strong transcription	Liver	Liver
32	chr1:85023600-85034200	Weak transcription	Fetal Muscle Leg	muscle
33	chr1:85024000-85035000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr1:85024000-85036200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr1:85024200-85033400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:85024600-85032000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:85024600-85036400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr1:85024800-85038800	Weak transcription	Brain Angular Gyrus	brain
39	chr1:85025000-85031200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:85025000-85036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:85025400-85030200	Weak transcription	Fetal Stomach	stomach
42	chr1:85025400-85037000	Weak transcription	Small Intestine	intestine
43	chr1:85025600-85030200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:85025600-85038800	Weak transcription	HSMMtube	muscle
45	chr1:85025800-85031400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr1:85025800-85038800	Weak transcription	Brain Substantia Nigra	brain
47	chr1:85025800-85038800	Weak transcription	Fetal Heart	heart
48	chr1:85026000-85031000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:85026200-85030200	Weak transcription	GM12878-XiMat	blood
50	chr1:85026200-85030800	Strong transcription	Primary B cells from peripheral blood	blood

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