Variant report

Variant	rs17110157
Chromosome Location	chr1:84948540-84948541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84941357..84944267-chr1:84948285..84950079,2	MCF-7	breast:
2	chr1:84946525..84949349-chr1:84951021..84952787,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1043493	1.00[GIH][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs10493753	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11164003	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11164009	0.91[GIH][hapmap]
rs1156435	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs11801891	0.89[EUR][1000 genomes]
rs11802781	0.89[EUR][1000 genomes]
rs11804372	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17099163	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs17109966	1.00[ASW][hapmap];0.88[LWK][hapmap]
rs17110695	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110700	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110865	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111233	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17111283	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17111299	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111308	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs17111314	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111351	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17111464	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs17111498	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17131722	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131723	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935748	0.89[EUR][1000 genomes]
rs58273089	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58339631	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59441149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59605677	0.85[AMR][1000 genomes]
rs59898877	0.89[EUR][1000 genomes]
rs61304651	0.85[AMR][1000 genomes]
rs61699375	0.89[EUR][1000 genomes]
rs6681870	0.91[GIH][hapmap]
rs6683385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6688208	1.00[CEU][hapmap]
rs72950323	0.89[EUR][1000 genomes]
rs72950341	0.89[EUR][1000 genomes]
rs7524406	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7528067	1.00[CEU][hapmap];0.92[LWK][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7530632	0.89[EUR][1000 genomes]
rs7547026	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs9782922	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84945600-84949000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:84946000-84948600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:84946000-84949000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:84946000-84949000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:84946000-84956400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:84946000-84956400	Weak transcription	Gastric	stomach
7	chr1:84946000-84956400	Weak transcription	Spleen	Spleen
8	chr1:84946000-84965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:84946000-84967000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:84946000-84969600	Weak transcription	Esophagus	oesophagus
11	chr1:84946000-84970400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:84946000-84970800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:84946200-84948600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:84946200-84948600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:84946200-84949000	Weak transcription	Fetal Stomach	stomach
16	chr1:84946200-84949200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:84946200-84955200	Weak transcription	Right Ventricle	heart
18	chr1:84946200-84956200	Weak transcription	Colonic Mucosa	Colon
19	chr1:84946200-84962800	Weak transcription	HSMMtube	muscle
20	chr1:84946400-84948600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:84946400-84948600	Weak transcription	Osteobl	bone
22	chr1:84946400-84948800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr1:84946400-84949000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:84946400-84949400	Weak transcription	NH-A	brain
25	chr1:84946400-84955200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:84946400-84955600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr1:84946400-84956200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:84946400-84956400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:84946400-84962000	Weak transcription	Fetal Brain Male	brain
30	chr1:84946400-84962800	Weak transcription	Stomach Mucosa	stomach
31	chr1:84946600-84948600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:84946600-84950800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:84946600-84955600	Weak transcription	Brain Germinal Matrix	brain
34	chr1:84946600-84956400	Weak transcription	Psoas Muscle	Psoas
35	chr1:84946800-84948600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr1:84946800-84955400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:84946800-84967400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:84947000-84948800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr1:84947000-84950400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:84947000-84950400	Strong transcription	Placenta	Placenta
41	chr1:84947000-84953200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:84947000-84965800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:84947200-84948600	Weak transcription	Liver	Liver
44	chr1:84947200-84948600	Active TSS	GM12878-XiMat	blood
45	chr1:84947200-84949000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:84947200-84949000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:84947200-84949200	Weak transcription	Adipose Nuclei	Adipose
48	chr1:84947200-84949200	Weak transcription	Fetal Intestine Large	intestine
49	chr1:84947200-84949200	Weak transcription	Thymus	Thymus
50	chr1:84947200-84949400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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