The 2.0 version of rSNPBase

Variant report

Variant rs59898877
Chromosome Location chr1:85025945-85025946
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84975800-85030200 Weak transcription Fetal Intestine Small intestine
2 chr1:84982400-85026800 Weak transcription Primary hematopoietic stem cells blood
3 chr1:84991000-85034200 Weak transcription Esophagus oesophagus
4 chr1:84991000-85038200 Weak transcription Thymus Thymus
5 chr1:84991800-85026800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:84992200-85026000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr1:84992400-85038800 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr1:84993400-85027000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:84993600-85026800 Weak transcription HSMM muscle
10 chr1:84994000-85026600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:84995000-85028600 Weak transcription Fetal Intestine Large intestine
12 chr1:84998600-85038800 Weak transcription Right Ventricle heart
13 chr1:85000800-85027400 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:85001400-85036400 Weak transcription NH-A brain
15 chr1:85001600-85033600 Weak transcription NHLF lung
16 chr1:85001800-85026600 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr1:85001800-85028600 Weak transcription Fetal Thymus thymus
18 chr1:85002000-85038400 Weak transcription Aorta Aorta
19 chr1:85002200-85027600 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr1:85002200-85034200 Weak transcription Lung lung
21 chr1:85003000-85027800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:85003800-85026000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:85003800-85033600 Weak transcription Left Ventricle heart
24 chr1:85004000-85036400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:85005200-85035000 Weak transcription Pancreas Pancrea
26 chr1:85006200-85027800 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:85006200-85034600 Weak transcription Ovary ovary
28 chr1:85006200-85034800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:85006400-85034400 Weak transcription Colon Smooth Muscle Colon
30 chr1:85006600-85038600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:85006800-85027000 Weak transcription Muscle Satellite Cultured Cells --
32 chr1:85007200-85027200 Weak transcription Fetal Lung lung
33 chr1:85007200-85038600 Weak transcription Rectal Smooth Muscle rectum
34 chr1:85007400-85027800 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr1:85007600-85026400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:85008800-85039000 Weak transcription Fetal Brain Male brain
37 chr1:85009400-85037000 Weak transcription HUVEC blood vessel
38 chr1:85012800-85027000 Weak transcription Adipose Nuclei Adipose
39 chr1:85013200-85027600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr1:85014800-85039600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:85016600-85036400 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr1:85017400-85036400 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr1:85017400-85039600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:85018200-85027200 Weak transcription Placenta Placenta
45 chr1:85019200-85027800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr1:85019200-85038400 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr1:85019400-85032200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:85019600-85027800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:85019800-85030200 Weak transcription NHEK skin
50 chr1:85020000-85027800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015