Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85037908..85041782-chr1:85043004..85047571,5	MCF-7	breast:
2	chr1:85038597..85041705-chr1:85043039..85046332,5	K562	blood:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1043493	1.00[ASN][1000 genomes]
rs11164009	0.83[EUR][1000 genomes]
rs1156435	1.00[ASN][1000 genomes]
rs11801891	1.00[ASN][1000 genomes]
rs11802781	1.00[ASN][1000 genomes]
rs11804372	1.00[ASN][1000 genomes]
rs12084159	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17099163	1.00[ASN][1000 genomes]
rs17111299	1.00[ASN][1000 genomes]
rs17111308	1.00[ASN][1000 genomes]
rs17111314	1.00[ASN][1000 genomes]
rs17111351	1.00[ASN][1000 genomes]
rs17111464	1.00[ASN][1000 genomes]
rs17112191	1.00[ASN][1000 genomes]
rs17112247	1.00[ASN][1000 genomes]
rs17112268	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2138169	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2945136	0.80[EUR][1000 genomes]
rs57295979	1.00[ASN][1000 genomes]
rs58537059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59898877	1.00[ASN][1000 genomes]
rs61699375	1.00[ASN][1000 genomes]
rs6657708	1.00[AMR][1000 genomes]
rs6679620	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6681870	0.83[EUR][1000 genomes]
rs6692607	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72950323	1.00[ASN][1000 genomes]
rs72950341	1.00[ASN][1000 genomes]
rs7517918	1.00[ASN][1000 genomes]
rs7524406	1.00[ASN][1000 genomes]
rs7530632	1.00[ASN][1000 genomes]
rs7533783	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85040000-85049400	Weak transcription	Spleen	Spleen
2	chr1:85040600-85048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:85040800-85046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:85040800-85048200	Weak transcription	Primary B cells from cord blood	blood
5	chr1:85040800-85048600	Weak transcription	Gastric	stomach
6	chr1:85040800-85049200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:85041000-85048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:85041000-85048800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:85041000-85051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:85041200-85046400	Weak transcription	K562	blood
11	chr1:85041200-85047400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:85041200-85049400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:85041400-85049200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:85042600-85045200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr1:85042800-85048600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr1:85043000-85050800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:85044200-85050800	Weak transcription	Monocytes-CD14+_RO01746	blood

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