Variant report

Variant	rs17112268
Chromosome Location	chr1:85065152-85065153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85060422..85063217-chr1:85063481..85066367,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10493753	1.00[CEU][hapmap]
rs1107982	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11164003	1.00[CEU][hapmap]
rs1156435	1.00[CEU][hapmap]
rs11804372	1.00[CEU][hapmap]
rs17099163	1.00[CEU][hapmap]
rs17110157	1.00[CEU][hapmap]
rs17110695	1.00[CEU][hapmap]
rs17110700	1.00[CEU][hapmap]
rs17110865	1.00[CEU][hapmap]
rs17111233	1.00[CEU][hapmap]
rs17111283	1.00[CEU][hapmap]
rs17111299	1.00[CEU][hapmap]
rs17111308	1.00[CEU][hapmap]
rs17111314	1.00[CEU][hapmap]
rs17111351	1.00[CEU][hapmap]
rs17111464	1.00[CEU][hapmap]
rs17111498	1.00[CEU][hapmap]
rs17131722	1.00[CEU][hapmap]
rs17131723	1.00[CEU][hapmap]
rs2138169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2945136	0.93[EUR][1000 genomes]
rs57674741	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58537059	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6657708	0.92[AMR][1000 genomes]
rs6679620	0.82[AMR][1000 genomes]
rs6688208	1.00[CEU][hapmap]
rs6692607	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7524406	1.00[CEU][hapmap]
rs7528067	1.00[CEU][hapmap]
rs7533783	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7547026	1.00[CEU][hapmap]
rs9782922	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85051000-85069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:85062800-85066800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:85063400-85065400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:85063600-85065400	Enhancers	NHDF-Ad	bronchial
5	chr1:85064200-85065400	Enhancers	Colon Smooth Muscle	Colon
6	chr1:85064200-85065600	Enhancers	Brain Angular Gyrus	brain
7	chr1:85064200-85065600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:85064200-85065800	Flanking Active TSS	GM12878-XiMat	blood
9	chr1:85064400-85065200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:85064400-85065200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:85064400-85065200	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:85064400-85065200	Flanking Active TSS	Osteobl	bone
13	chr1:85064400-85065800	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:85064400-85066000	Enhancers	HMEC	breast
15	chr1:85064400-85066000	Enhancers	NHEK	skin
16	chr1:85064400-85066400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:85064600-85065200	Flanking Active TSS	HSMM	muscle
18	chr1:85064600-85065600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr1:85064600-85066000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:85064600-85066200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:85064800-85065200	Enhancers	Brain Hippocampus Middle	brain
22	chr1:85064800-85065200	Enhancers	Fetal Intestine Small	intestine
23	chr1:85064800-85065200	Flanking Active TSS	HSMMtube	muscle
24	chr1:85064800-85065200	Flanking Active TSS	HUVEC	blood vessel
25	chr1:85064800-85065200	Flanking Active TSS	NHLF	lung
26	chr1:85064800-85065600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:85064800-85065600	Enhancers	Fetal Muscle Leg	muscle
28	chr1:85064800-85065600	Enhancers	Left Ventricle	heart
29	chr1:85064800-85065800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr1:85064800-85065800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:85064800-85066200	Enhancers	Fetal Heart	heart
32	chr1:85064800-85067000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:85065000-85065200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:85065000-85065200	Flanking Active TSS	Hela-S3	cervix
35	chr1:85065000-85065400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:85065000-85065400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:85065000-85065400	Active TSS	NH-A	brain
38	chr1:85065000-85065600	Active TSS	Stomach Smooth Muscle	stomach
39	chr1:85065000-85065800	Enhancers	Aorta	Aorta
40	chr1:85065000-85066400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:85065000-85066400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links