Variant report

Variant	rs72953858
Chromosome Location	chr6:118150809-118150810
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117667475..117668077-chr6:118150803..118151650,3	MCF-7	breast:
2	chr6:118145703..118148087-chr6:118150762..118152792,2	K562	blood:
3	chr6:118145867..118148087-chr6:118150158..118152792,2	K562	blood:
4	chr6:117667375..117667938-chr6:118150757..118151683,3	K562	blood:
5	chr6:117926214..117926984-chr6:118150760..118151474,2	MCF-7	breast:
6	chr6:117770674..117771260-chr6:118150789..118151724,2	K562	blood:
7	chr6:117720955..117721772-chr6:118150708..118151251,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1016083	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17820580	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17821187	0.90[AMR][1000 genomes]
rs56341041	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72955845	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72955865	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv830786	chr6:118026955-118201660	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118150600-118151000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:118150600-118151000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:118150600-118151000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:118150600-118151200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:118150600-118151200	Active TSS	A549	lung
6	chr6:118150600-118151200	Active TSS	NH-A	brain
7	chr6:118150800-118151000	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:118150800-118151000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:118150800-118151000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:118150800-118151000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:118150800-118151000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:118150800-118151000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr6:118150800-118151000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:118150800-118151000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:118150800-118151000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:118150800-118151000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr6:118150800-118151000	Flanking Active TSS	Hela-S3	cervix
18	chr6:118150800-118151200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr6:118150800-118151200	Active TSS	H1 Cell Line	embryonic stem cell
20	chr6:118150800-118151200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:118150800-118151200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:118150800-118151200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:118150800-118151200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:118150800-118151200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:118150800-118151200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:118150800-118151200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:118150800-118151200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:118150800-118151200	Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr6:118150800-118151200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:118150800-118151200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:118150800-118151200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
32	chr6:118150800-118151200	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:118150800-118151200	Active TSS	HMEC	breast
34	chr6:118150800-118151200	Active TSS	HSMM	muscle
35	chr6:118150800-118151200	Active TSS	HSMMtube	muscle
36	chr6:118150800-118151200	Active TSS	Osteobl	bone
37	chr6:118150800-118151400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:118150800-118151400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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