Variant report

Variant	rs56341041
Chromosome Location	chr6:118266175-118266176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1016083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416415	0.82[ASN][1000 genomes]
rs17820580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2355794	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56023830	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66500761	0.82[ASN][1000 genomes]
rs72953858	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72955845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489285	1.00[ASN][1000 genomes]
rs9489288	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118259800-118266800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:118260200-118266800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118260200-118268200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118260800-118272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:118261400-118272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:118265200-118267200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:118265600-118266200	Enhancers	Fetal Lung	lung
8	chr6:118265800-118267200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr6:118266000-118266400	Enhancers	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links