Variant report

Variant	rs9489285
Chromosome Location	chr6:118264863-118264864
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1016083	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1416415	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17820580	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17821187	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2355794	1.00[ASN][1000 genomes]
rs56023830	1.00[ASN][1000 genomes]
rs56341041	1.00[ASN][1000 genomes]
rs66500761	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72955845	1.00[ASN][1000 genomes]
rs72955865	1.00[ASN][1000 genomes]
rs9489288	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118259800-118266800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:118260200-118266800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118260200-118268200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118260400-118265200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:118260800-118272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:118261400-118272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links