Variant report

Variant	rs9489288
Chromosome Location	chr6:118271405-118271406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1016083	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1416415	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17820580	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17821187	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2355794	1.00[ASN][1000 genomes]
rs5002415	0.84[LWK][hapmap];0.85[YRI][hapmap]
rs56023830	1.00[ASN][1000 genomes]
rs56341041	1.00[ASN][1000 genomes]
rs66500761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72955845	1.00[ASN][1000 genomes]
rs72955865	1.00[ASN][1000 genomes]
rs9489285	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118260800-118272400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:118261400-118272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:118267200-118272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:118267200-118273000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:118268800-118271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:118268800-118272400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:118269000-118272000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:118271000-118272800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:118271200-118271600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:118271200-118274200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:118271400-118271600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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