Variant report

Variant	rs72957994
Chromosome Location	chr2:180447472-180447473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3106709	0.86[AMR][1000 genomes]
rs61515342	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72953712	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72953722	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72953725	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72953754	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72957600	0.86[AMR][1000 genomes]
rs72957991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967298	0.86[AMR][1000 genomes]
rs72969212	0.86[AMR][1000 genomes]
rs72969215	0.86[AMR][1000 genomes]
rs72969229	0.86[AMR][1000 genomes]
rs908285	0.86[AMR][1000 genomes]
rs9750251	0.83[AMR][1000 genomes]
rs984893	0.86[AMR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180445200-180450600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:180445600-180449400	Weak transcription	Right Atrium	heart
4	chr2:180445800-180449200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:180445800-180449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:180445800-180449200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:180446000-180449200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180446200-180449200	Weak transcription	Fetal Heart	heart
9	chr2:180446400-180449200	Weak transcription	Liver	Liver
10	chr2:180446800-180449200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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