Variant report

Variant	rs72959675
Chromosome Location	chr4:150917315-150917316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs60173171	1.00[AMR][1000 genomes]
rs6823811	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951637	1.00[AMR][1000 genomes]
rs72957534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72957536	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959659	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959674	1.00[AMR][1000 genomes]
rs72959680	1.00[AMR][1000 genomes]
rs72961404	1.00[AMR][1000 genomes]
rs72961411	1.00[AMR][1000 genomes]
rs72961425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150908400-150919200	Weak transcription	Pancreas	Pancrea
2	chr4:150909400-150919000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:150914600-150918800	Weak transcription	Osteobl	bone
4	chr4:150916800-150919000	Weak transcription	Ovary	ovary
5	chr4:150917000-150919000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:150917000-150919000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:150917000-150919000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:150917000-150919200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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