Variant report

Variant	rs72961404
Chromosome Location	chr4:150921690-150921691
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:150919568..150921696-chr4:151121146..151122863,2	MCF-7	breast:
2	chr4:150915171..150917303-chr4:150919210..150921957,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57572830	0.84[AFR][1000 genomes]
rs60173171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60571740	0.84[AFR][1000 genomes]
rs61607054	0.87[AFR][1000 genomes]
rs6823811	1.00[AMR][1000 genomes]
rs72951637	1.00[AMR][1000 genomes]
rs72957534	1.00[AMR][1000 genomes]
rs72957536	1.00[AMR][1000 genomes]
rs72959659	1.00[AMR][1000 genomes]
rs72959661	1.00[AMR][1000 genomes]
rs72959669	1.00[AMR][1000 genomes]
rs72959674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72959675	1.00[AMR][1000 genomes]
rs72959680	1.00[AMR][1000 genomes]
rs72961411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961425	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72961440	0.84[AFR][1000 genomes]
rs72961442	0.84[AFR][1000 genomes]
rs72961447	0.84[AFR][1000 genomes]
rs72961457	0.84[AFR][1000 genomes]
rs72961459	0.84[AFR][1000 genomes]
rs72961468	0.81[AFR][1000 genomes]
rs72961471	0.81[AFR][1000 genomes]
rs72961487	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv830111	chr4:150867357-151035556	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530158	chr4:150877557-151040992	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150919400-150924800	Weak transcription	Ovary	ovary
2	chr4:150919600-150922800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:150919600-150922800	Weak transcription	HSMM	muscle
4	chr4:150919600-150922800	Weak transcription	NH-A	brain
5	chr4:150919600-150923600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:150919600-150923600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:150919600-150923600	Weak transcription	HSMMtube	muscle
8	chr4:150919600-150923800	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:150919600-150924400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:150919600-150925200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:150919600-150925200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:150919600-150925400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:150919600-150925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:150919600-150925400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:150919600-150927000	Weak transcription	Pancreas	Pancrea
16	chr4:150919600-150931800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:150919800-150922800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:150919800-150922800	Weak transcription	Osteobl	bone
19	chr4:150919800-150923600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:150919800-150924400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:150919800-150925600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:150919800-150928600	Weak transcription	HMEC	breast
23	chr4:150920000-150926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:150921200-150922800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:150921400-150925400	Weak transcription	NHDF-Ad	bronchial
26	chr4:150921600-150923000	Weak transcription	A549	lung
27	chr4:150921600-150924800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:150921600-150927000	Weak transcription	Liver	Liver

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