Variant report
| Variant | rs72959983 |
|---|---|
| Chromosome Location | chr4:149862939-149862940 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NR3C2-2 | chr4:149862809-149862994 | XLOC_004118 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10010253 | 1.00[AMR][1000 genomes] |
| rs10012689 | 1.00[AMR][1000 genomes] |
| rs28633438 | 1.00[AMR][1000 genomes] |
| rs28664899 | 1.00[AMR][1000 genomes] |
| rs56973742 | 1.00[AMR][1000 genomes] |
| rs59323238 | 1.00[AMR][1000 genomes] |
| rs59647681 | 1.00[AMR][1000 genomes] |
| rs60112920 | 1.00[AMR][1000 genomes] |
| rs72950440 | 1.00[AMR][1000 genomes] |
| rs72950468 | 1.00[AMR][1000 genomes] |
| rs72950497 | 1.00[AMR][1000 genomes] |
| rs72959921 | 1.00[AMR][1000 genomes] |
| rs72959938 | 1.00[AMR][1000 genomes] |
| rs72959947 | 1.00[AMR][1000 genomes] |
| rs72959954 | 1.00[AMR][1000 genomes] |
| rs72959958 | 1.00[AMR][1000 genomes] |
| rs72959992 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72963090 | 1.00[AMR][1000 genomes] |
| rs72965114 | 1.00[AMR][1000 genomes] |
| rs72965118 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461677 | chr4:149794284-149903982 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv595686 | chr4:149794284-149903982 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv470083 | chr4:149817052-149903982 | Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
