Variant report

Variant	rs72959992
Chromosome Location	chr4:149868564-149868565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10010253	1.00[AMR][1000 genomes]
rs10012689	1.00[AMR][1000 genomes]
rs28633438	1.00[AMR][1000 genomes]
rs28664899	1.00[AMR][1000 genomes]
rs56973742	1.00[AMR][1000 genomes]
rs59323238	1.00[AMR][1000 genomes]
rs59647681	1.00[AMR][1000 genomes]
rs60112920	1.00[AMR][1000 genomes]
rs72950440	1.00[AMR][1000 genomes]
rs72950468	1.00[AMR][1000 genomes]
rs72950497	1.00[AMR][1000 genomes]
rs72959921	1.00[AMR][1000 genomes]
rs72959938	1.00[AMR][1000 genomes]
rs72959947	1.00[AMR][1000 genomes]
rs72959954	1.00[AMR][1000 genomes]
rs72959958	1.00[AMR][1000 genomes]
rs72959983	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963090	1.00[AMR][1000 genomes]
rs72965114	1.00[AMR][1000 genomes]
rs72965118	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149867400-149871200	Weak transcription	Fetal Brain Male	brain
2	chr4:149868400-149868600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:149868400-149869400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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