Variant report

Variant	rs72960867
Chromosome Location	chr1:92872499-92872500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs35258161	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56871729	0.93[AFR][1000 genomes]
rs56950188	0.93[AFR][1000 genomes]
rs59302389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59912348	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60450096	0.86[AFR][1000 genomes]
rs61638989	1.00[AMR][1000 genomes]
rs72956883	1.00[AMR][1000 genomes]
rs72958741	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958744	0.86[AFR][1000 genomes]
rs72958751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958758	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958788	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72960828	1.00[AFR][1000 genomes]
rs7531207	1.00[AMR][1000 genomes]
rs7538609	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3453601	chr1:92872220-92872580	Weak transcription	n/a	n/a	inside rSNPs	diseases
2	esv3453602	chr1:92872220-92872580	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92863200-92874400	Weak transcription	Thymus	Thymus
2	chr1:92870400-92875000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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