Variant report

Variant	rs72962565
Chromosome Location	chr3:119060693-119060694
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119039655..119042714-chr3:119058706..119061390,3	MCF-7	breast:
2	chr3:119040520..119043561-chr3:119060040..119062334,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11916942	1.00[EUR][1000 genomes]
rs11917054	1.00[EUR][1000 genomes]
rs11918611	1.00[EUR][1000 genomes]
rs11919244	1.00[EUR][1000 genomes]
rs11921860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927863	1.00[EUR][1000 genomes]
rs13327592	1.00[EUR][1000 genomes]
rs57447123	1.00[EUR][1000 genomes]
rs58318736	1.00[EUR][1000 genomes]
rs58369563	1.00[EUR][1000 genomes]
rs6767853	1.00[EUR][1000 genomes]
rs72968486	1.00[EUR][1000 genomes]
rs73857025	1.00[EUR][1000 genomes]
rs7611869	1.00[EUR][1000 genomes]
rs9810251	1.00[EUR][1000 genomes]
rs9810388	1.00[EUR][1000 genomes]
rs9824383	1.00[EUR][1000 genomes]
rs9828041	1.00[EUR][1000 genomes]
rs9830074	1.00[EUR][1000 genomes]
rs9841997	1.00[EUR][1000 genomes]
rs9846150	1.00[EUR][1000 genomes]
rs9847851	1.00[EUR][1000 genomes]
rs9853937	1.00[EUR][1000 genomes]
rs9860820	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119042800-119070600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:119042800-119072000	Weak transcription	Thymus	Thymus
3	chr3:119043000-119069000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:119043200-119062400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:119046000-119064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:119046000-119064600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:119048800-119062800	Weak transcription	Osteobl	bone
8	chr3:119049200-119062200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:119049200-119071200	Weak transcription	Aorta	Aorta
10	chr3:119049600-119068000	Weak transcription	NH-A	brain
11	chr3:119050000-119062000	Weak transcription	Placenta	Placenta
12	chr3:119050800-119064600	Weak transcription	HSMMtube	muscle
13	chr3:119050800-119075800	Weak transcription	Pancreas	Pancrea
14	chr3:119051000-119064800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:119052000-119062000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:119052000-119064600	Weak transcription	Fetal Intestine Small	intestine
17	chr3:119052600-119064200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:119053200-119064800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:119053200-119087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:119053400-119064400	Weak transcription	Psoas Muscle	Psoas
21	chr3:119053400-119064400	Weak transcription	Spleen	Spleen
22	chr3:119053400-119068200	Weak transcription	Right Ventricle	heart
23	chr3:119053400-119087000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:119053600-119064200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:119053600-119067800	Weak transcription	Fetal Lung	lung
26	chr3:119053600-119071400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:119054600-119062400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:119056200-119062200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr3:119056400-119061600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:119056400-119064200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:119056400-119067800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:119056400-119068200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:119056400-119071600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:119056600-119062200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:119056600-119064400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:119057000-119064800	Weak transcription	HSMM	muscle
37	chr3:119057800-119068000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:119058000-119064200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:119058200-119060800	Weak transcription	NHDF-Ad	bronchial
40	chr3:119058200-119064400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:119059000-119060800	Enhancers	Fetal Heart	heart
42	chr3:119059400-119062000	Weak transcription	GM12878-XiMat	blood
43	chr3:119059600-119061000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:119059600-119062400	Weak transcription	Fetal Stomach	stomach
45	chr3:119059800-119062200	Weak transcription	Adipose Nuclei	Adipose
46	chr3:119059800-119064800	Weak transcription	HUVEC	blood vessel
47	chr3:119060000-119062400	Weak transcription	Left Ventricle	heart
48	chr3:119060200-119062400	Weak transcription	Lung	lung
49	chr3:119060200-119064200	Weak transcription	Ovary	ovary
50	chr3:119060200-119064200	Weak transcription	Right Atrium	heart

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