Variant report

Variant	rs72962977
Chromosome Location	chr4:152680433-152680434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57034552	1.00[AMR][1000 genomes]
rs58776263	1.00[AMR][1000 genomes]
rs60850965	1.00[AMR][1000 genomes]
rs72962990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72966815	1.00[AMR][1000 genomes]
rs73862074	1.00[AMR][1000 genomes]
rs73862264	1.00[AMR][1000 genomes]
rs73862267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152629200-152681400	Weak transcription	Colonic Mucosa	Colon
2	chr4:152629400-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:152651800-152681400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:152658600-152681200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:152659000-152681400	Weak transcription	Pancreas	Pancrea
6	chr4:152659400-152681400	Weak transcription	Thymus	Thymus
7	chr4:152659600-152681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:152659800-152681400	Weak transcription	Spleen	Spleen
9	chr4:152660800-152681000	Weak transcription	Fetal Lung	lung
10	chr4:152662600-152681400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:152665400-152681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:152666200-152681200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:152666400-152681000	Weak transcription	HUVEC	blood vessel
14	chr4:152666400-152681200	Weak transcription	Hela-S3	cervix
15	chr4:152666600-152681200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:152666800-152681200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:152667000-152681200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:152667200-152681000	Weak transcription	GM12878-XiMat	blood
19	chr4:152667400-152681000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:152667400-152681000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:152667400-152681200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:152667400-152681200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:152667400-152681200	Weak transcription	Brain Angular Gyrus	brain
24	chr4:152667400-152681200	Weak transcription	HSMMtube	muscle
25	chr4:152667400-152681200	Weak transcription	NHDF-Ad	bronchial
26	chr4:152667600-152681200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:152667800-152681200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:152668000-152681200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:152668000-152681200	Weak transcription	Fetal Brain Female	brain
30	chr4:152668000-152681400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:152668000-152681400	Weak transcription	Fetal Brain Male	brain
32	chr4:152668400-152681200	Weak transcription	Fetal Heart	heart
33	chr4:152668600-152681200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:152668600-152681200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:152668600-152681200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:152668600-152681200	Weak transcription	K562	blood
37	chr4:152668600-152681200	Weak transcription	NHLF	lung
38	chr4:152668600-152681400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:152668600-152681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:152668600-152681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:152670000-152681200	Weak transcription	Brain Germinal Matrix	brain
42	chr4:152671600-152681200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr4:152671600-152681400	Weak transcription	Fetal Intestine Small	intestine
44	chr4:152672400-152681200	Weak transcription	Psoas Muscle	Psoas
45	chr4:152674400-152681400	Weak transcription	Aorta	Aorta
46	chr4:152674600-152681200	Weak transcription	Osteobl	bone
47	chr4:152674600-152681400	Weak transcription	Ovary	ovary
48	chr4:152675000-152681200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:152675200-152681000	Weak transcription	HMEC	breast
50	chr4:152675400-152681000	Weak transcription	NHEK	skin

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