The 2.0 version of rSNPBase

Variant report

Variant rs72965388
Chromosome Location chr3:53125773-53125774
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53107600-53133600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr3:53107800-53126000 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr3:53107800-53134000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr3:53107800-53151400 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr3:53117600-53130800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
6 chr3:53117800-53147200 Weak transcription Psoas Muscle Psoas
7 chr3:53118200-53129800 Weak transcription Fetal Brain Male brain
8 chr3:53118600-53135200 Weak transcription NH-A brain
9 chr3:53118800-53125800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr3:53118800-53132000 Weak transcription HSMM muscle
11 chr3:53118800-53135200 Strong transcription Fetal Thymus thymus
12 chr3:53119000-53128000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr3:53119000-53135000 Weak transcription K562 blood
14 chr3:53119000-53154200 Weak transcription Stomach Mucosa stomach
15 chr3:53119200-53133800 Strong transcription Fetal Stomach stomach
16 chr3:53119600-53125800 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr3:53119600-53136000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr3:53120400-53132000 Weak transcription Hela-S3 cervix
19 chr3:53120400-53138600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr3:53120600-53134600 Strong transcription Primary T helper cells fromperipheralblood blood
21 chr3:53120800-53126600 Strong transcription Fetal Adrenal Gland Adrenal Gland
22 chr3:53120800-53128400 Strong transcription Gastric stomach
23 chr3:53120800-53138400 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr3:53120800-53144400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr3:53121200-53130200 Strong transcription Primary B cells from peripheral blood blood
26 chr3:53121200-53130200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr3:53121200-53134200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr3:53121400-53128200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr3:53121400-53128400 Strong transcription Spleen Spleen
30 chr3:53121400-53130600 Strong transcription Primary T regulatory cells fromperipheralblood blood
31 chr3:53121400-53142600 Strong transcription Stomach Smooth Muscle stomach
32 chr3:53121600-53129000 Strong transcription Primary B cells from cord blood blood
33 chr3:53121800-53135400 Strong transcription Primary T cells from cord blood blood
34 chr3:53121800-53137800 Strong transcription Fetal Muscle Trunk muscle
35 chr3:53122200-53130200 Strong transcription Primary T helper naive cells fromperipheralblood blood
36 chr3:53122200-53132800 Weak transcription HUVEC blood vessel
37 chr3:53122200-53133200 Weak transcription A549 lung
38 chr3:53122400-53136800 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr3:53122400-53143200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr3:53122800-53152200 Weak transcription Small Intestine intestine
41 chr3:53123000-53128200 Strong transcription Aorta Aorta
42 chr3:53123000-53129600 Strong transcription Placenta Placenta
43 chr3:53123000-53133000 Weak transcription Fetal Kidney kidney
44 chr3:53123200-53126000 Strong transcription Liver Liver
45 chr3:53123200-53126400 Strong transcription HepG2 liver
46 chr3:53123200-53126800 Strong transcription Primary neutrophils fromperipheralblood blood
47 chr3:53123200-53126800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
48 chr3:53123200-53127000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr3:53123200-53127400 Enhancers Fetal Heart heart
50 chr3:53123200-53128400 Strong transcription Thymus Thymus

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Last update: Aug 31, 2015