Variant report

Variant	rs72969874
Chromosome Location	chr11:72588634-72588635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72578516..72581396-chr11:72586342..72589017,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206638	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72979433	1.00[EUR][1000 genomes]
rs72982854	1.00[AMR][1000 genomes]
rs72984921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
3	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
4	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
6	chr11:72552400-72597400	Weak transcription	HMEC	breast
7	chr11:72554600-72595800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:72554600-72596600	Weak transcription	Fetal Brain Female	brain
9	chr11:72555800-72595600	Weak transcription	Thymus	Thymus
10	chr11:72556800-72596600	Weak transcription	Spleen	Spleen
11	chr11:72557600-72595600	Weak transcription	Lung	lung
12	chr11:72567200-72612200	Weak transcription	Small Intestine	intestine
13	chr11:72574600-72589600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:72574800-72590800	Strong transcription	GM12878-XiMat	blood
15	chr11:72575000-72599200	Weak transcription	Hela-S3	cervix
16	chr11:72576000-72596400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:72576000-72596600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:72576000-72596800	Weak transcription	Ovary	ovary
19	chr11:72576200-72596800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:72576400-72596400	Weak transcription	NHEK	skin
21	chr11:72576800-72596400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:72576800-72602400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:72577000-72596400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:72577000-72596800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:72577000-72597000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:72577200-72596400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:72577200-72596400	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:72577200-72596400	Weak transcription	Right Ventricle	heart
29	chr11:72577200-72596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:72577200-72596600	Weak transcription	Adipose Nuclei	Adipose
31	chr11:72577200-72651600	Weak transcription	Gastric	stomach
32	chr11:72577400-72596400	Weak transcription	NHLF	lung
33	chr11:72577400-72597000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:72577400-72599600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:72577600-72595600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:72577600-72596800	Weak transcription	Aorta	Aorta
37	chr11:72577600-72597000	Weak transcription	Brain Germinal Matrix	brain
38	chr11:72578400-72595800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:72578400-72597600	Weak transcription	NHDF-Ad	bronchial
40	chr11:72578600-72596400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:72578800-72596600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:72579000-72596000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:72579600-72595800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr11:72579600-72596000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:72579600-72596400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:72579600-72596600	Weak transcription	Left Ventricle	heart
47	chr11:72579800-72596400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:72580400-72590800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:72581200-72596400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:72581200-72596400	Weak transcription	Primary T cells from cord blood	blood

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