Variant report

Variant	rs72982854
Chromosome Location	chr11:72723518-72723519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72969874	1.00[AMR][1000 genomes]
rs72977485	1.00[EUR][1000 genomes]
rs72984921	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv555411	chr11:72647296-72800970	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72687600-72724200	Weak transcription	HMEC	breast
2	chr11:72696000-72724000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:72701000-72727200	Weak transcription	HUVEC	blood vessel
4	chr11:72716200-72731200	Weak transcription	Fetal Kidney	kidney
5	chr11:72719600-72724400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:72720000-72731200	Weak transcription	Small Intestine	intestine
7	chr11:72721600-72723800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:72721800-72724000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:72721800-72724400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:72722000-72724000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:72722200-72724200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:72722200-72738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:72722400-72723800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:72722400-72723800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr11:72722400-72724000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:72722400-72724200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:72722400-72725000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:72722400-72725400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:72722400-72725400	Enhancers	Fetal Heart	heart
20	chr11:72722400-72725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:72722400-72726400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:72722400-72727000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:72722400-72731000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:72722600-72723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:72722600-72724200	Weak transcription	Adipose Nuclei	Adipose
26	chr11:72722600-72724200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:72722600-72724200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:72722600-72724400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr11:72722600-72725200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:72722600-72725800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr11:72722600-72726000	Genic enhancers	Primary B cells from peripheral blood	blood
32	chr11:72722600-72727200	Weak transcription	Fetal Lung	lung
33	chr11:72722600-72727800	Weak transcription	Liver	Liver
34	chr11:72722600-72728000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:72722600-72728000	Weak transcription	Gastric	stomach
36	chr11:72722600-72728000	Weak transcription	Ovary	ovary
37	chr11:72722600-72728200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr11:72722600-72730600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:72722600-72730600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:72722600-72731000	Weak transcription	Brain Germinal Matrix	brain
41	chr11:72722600-72738800	Weak transcription	Aorta	Aorta
42	chr11:72722600-72743600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:72722600-72746400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:72722800-72723800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:72722800-72724000	Weak transcription	A549	lung
46	chr11:72722800-72724200	Weak transcription	Pancreas	Pancrea
47	chr11:72722800-72724400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:72722800-72724400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:72722800-72724400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:72722800-72724400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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