Variant report

Variant	rs72973315
Chromosome Location	chr6:128162097-128162098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72973754	1.00[AFR][1000 genomes]
rs72973772	1.00[AFR][1000 genomes]
rs72975931	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830799	chr6:128033100-128194511	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128134800-128180200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:128139600-128178800	Weak transcription	Dnd41	blood
3	chr6:128158400-128166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:128160000-128162800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:128160600-128162400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128160600-128163600	Strong transcription	Thymus	Thymus
7	chr6:128160600-128176400	Strong transcription	Fetal Thymus	thymus
8	chr6:128160800-128163200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:128160800-128163200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:128161000-128162200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:128161000-128162200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:128161200-128162400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:128161200-128167000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:128161600-128165000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:128161800-128162400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:128162000-128163200	Strong transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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