Variant report

Variant	rs72976196
Chromosome Location	chr11:101102103-101102104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501971	0.87[AMR][1000 genomes]
rs10501972	0.87[AMR][1000 genomes]
rs10501973	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11224624	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17657984	0.84[AMR][1000 genomes]
rs17657994	0.84[AMR][1000 genomes]
rs17737091	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17737234	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17737362	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1938952	0.87[AMR][1000 genomes]
rs1938953	0.86[AMR][1000 genomes]
rs1942835	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1942845	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1942846	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1943752	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4268474	0.87[AMR][1000 genomes]
rs4439480	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4536177	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4754006	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754736	0.83[AMR][1000 genomes]
rs4754739	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55736559	0.84[AMR][1000 genomes]
rs55812053	0.84[AMR][1000 genomes]
rs55915704	0.83[AMR][1000 genomes]
rs55962215	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55963819	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56018629	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56230407	0.83[AMR][1000 genomes]
rs56409503	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66931960	0.84[AMR][1000 genomes]
rs67551904	0.84[AMR][1000 genomes]
rs72976138	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72976145	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72976155	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72976165	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72976167	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72976176	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72976194	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72999403	0.84[AMR][1000 genomes]
rs7934103	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7943375	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7946218	0.84[AMR][1000 genomes]
rs948516	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101095200-101105400	Weak transcription	Ovary	ovary
2	chr11:101102000-101102400	ZNF genes & repeats	Aorta	Aorta
3	chr11:101102000-101102600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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