Variant report

Variant	rs56409503
Chromosome Location	chr11:101089497-101089498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101086186..101088013-chr11:101088184..101090911,2	MCF-7	breast:
2	chr11:100998136..101000438-chr11:101087310..101089950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10501971	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10501972	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10501973	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10791450	1.00[ASN][1000 genomes]
rs10895074	1.00[ASN][1000 genomes]
rs10895077	1.00[ASN][1000 genomes]
rs11224624	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224647	1.00[ASN][1000 genomes]
rs12361300	1.00[ASN][1000 genomes]
rs12361308	1.00[ASN][1000 genomes]
rs12361309	1.00[ASN][1000 genomes]
rs12364289	1.00[ASN][1000 genomes]
rs17657984	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17657994	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17737091	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737180	1.00[ASN][1000 genomes]
rs17737234	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737362	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938952	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1938953	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1942835	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942845	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942846	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268474	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4439480	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536177	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536178	1.00[ASN][1000 genomes]
rs4754006	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754732	1.00[ASN][1000 genomes]
rs4754736	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754739	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55736559	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55812053	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55915704	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55962215	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55963819	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56018629	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56230407	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66931960	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67551904	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72976138	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976145	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976155	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976165	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976167	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976176	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976194	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72976196	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72978142	1.00[ASN][1000 genomes]
rs72997494	1.00[ASN][1000 genomes]
rs72999403	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7926556	1.00[ASN][1000 genomes]
rs7934103	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939192	1.00[ASN][1000 genomes]
rs7943375	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946218	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs948516	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs954723	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101095000	Weak transcription	Ovary	ovary

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