Variant report

Variant	rs4536178
Chromosome Location	chr11:101089310-101089311
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101086186..101088013-chr11:101088184..101090911,2	MCF-7	breast:
2	chr11:100998136..101000438-chr11:101087310..101089950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10501971	1.00[ASN][1000 genomes]
rs10501972	1.00[ASN][1000 genomes]
rs10501973	1.00[ASN][1000 genomes]
rs10791450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895074	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895077	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224624	1.00[ASN][1000 genomes]
rs11224647	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361300	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361308	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361309	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364289	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17657984	1.00[ASN][1000 genomes]
rs17657994	1.00[ASN][1000 genomes]
rs17737091	1.00[ASN][1000 genomes]
rs17737180	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17737234	1.00[ASN][1000 genomes]
rs17737362	1.00[ASN][1000 genomes]
rs1938952	1.00[ASN][1000 genomes]
rs1938953	1.00[ASN][1000 genomes]
rs1942835	1.00[ASN][1000 genomes]
rs1942845	1.00[ASN][1000 genomes]
rs1942846	1.00[ASN][1000 genomes]
rs1943752	1.00[ASN][1000 genomes]
rs2187361	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4268474	1.00[ASN][1000 genomes]
rs4439480	1.00[ASN][1000 genomes]
rs4536177	1.00[ASN][1000 genomes]
rs4593979	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4754006	1.00[ASN][1000 genomes]
rs4754732	1.00[ASN][1000 genomes]
rs4754736	1.00[ASN][1000 genomes]
rs4754739	1.00[ASN][1000 genomes]
rs55736559	1.00[ASN][1000 genomes]
rs55812053	1.00[ASN][1000 genomes]
rs55915704	1.00[ASN][1000 genomes]
rs55963819	1.00[ASN][1000 genomes]
rs56018629	1.00[ASN][1000 genomes]
rs56230407	1.00[ASN][1000 genomes]
rs56409503	1.00[ASN][1000 genomes]
rs61892346	0.84[AFR][1000 genomes]
rs66931960	1.00[ASN][1000 genomes]
rs67551904	1.00[ASN][1000 genomes]
rs7112963	0.84[AFR][1000 genomes]
rs72976138	1.00[ASN][1000 genomes]
rs72976145	1.00[ASN][1000 genomes]
rs72976155	1.00[ASN][1000 genomes]
rs72976165	1.00[ASN][1000 genomes]
rs72976167	1.00[ASN][1000 genomes]
rs72976176	1.00[ASN][1000 genomes]
rs72976194	1.00[ASN][1000 genomes]
rs72978142	1.00[ASN][1000 genomes]
rs72997494	1.00[ASN][1000 genomes]
rs72999403	1.00[ASN][1000 genomes]
rs7926556	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934103	1.00[ASN][1000 genomes]
rs7939192	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943375	1.00[ASN][1000 genomes]
rs7946218	1.00[ASN][1000 genomes]
rs948516	1.00[ASN][1000 genomes]
rs954723	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101095000	Weak transcription	Ovary	ovary
2	chr11:101088800-101089400	Enhancers	Liver	Liver

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