Variant report

Variant	rs2187361
Chromosome Location	chr11:101096566-101096567
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10791450	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10895074	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895077	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224647	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12361300	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12361308	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12361309	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12364289	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17737180	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4536178	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4593979	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4754743	0.89[ASW][hapmap];0.85[YRI][hapmap]
rs493220	1.00[CHD][hapmap]
rs495997	1.00[CHD][hapmap]
rs596223	1.00[CHD][hapmap]
rs632542	1.00[CHD][hapmap]
rs7926556	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7939192	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs954723	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2187361	MMP1	cis	parietal	SCAN
rs2187361	ABAT	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101092400-101102000	Weak transcription	Aorta	Aorta
2	chr11:101095200-101105400	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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