Variant report

Variant	rs4593979
Chromosome Location	chr11:101090770-101090771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10791450	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895074	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10895077	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11224647	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12361300	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12361308	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12361309	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12364289	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17737180	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2187361	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4536178	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7926556	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7939192	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs954723	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101095000	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links